Strain Fitness in Escherichia coli BW25113 around b1822

Experiment: Gly-Glu (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyobD and b1821 are separated by 428 nucleotidesb1821 and rrmA overlap by 4 nucleotidesrrmA and cspC are separated by 165 nucleotidescspC and yobF are separated by 12 nucleotides b1820: yobD - hypothetical protein (NCBI), at 1,902,825 to 1,903,283 yobD b1821: b1821 - orf, hypothetical protein (VIMSS), at 1,903,712 to 1,904,278 b1821 b1822: rrmA - 23S rRNA m1G745 methyltransferase (NCBI), at 1,904,275 to 1,905,084 rrmA b1823: cspC - stress protein, member of the CspA-family (NCBI), at 1,905,250 to 1,905,459 cspC b1824: yobF - hypothetical protein (NCBI), at 1,905,472 to 1,905,615 yobF Position (kb) 1904 1905 1906Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1903.496 kb on - strandat 1903.498 kb on - strandat 1903.529 kb on + strandat 1903.537 kb on - strandat 1903.548 kb on + strandat 1903.553 kb on + strandat 1903.558 kb on + strandat 1903.558 kb on + strandat 1903.583 kb on + strandat 1903.602 kb on - strandat 1903.602 kb on - strandat 1903.639 kb on - strandat 1903.654 kb on - strandat 1903.702 kb on + strandat 1903.777 kb on - strand, within b1821at 1903.777 kb on - strand, within b1821at 1904.065 kb on - strand, within b1821at 1904.087 kb on - strand, within b1821at 1904.603 kb on + strand, within rrmAat 1904.603 kb on + strand, within rrmAat 1904.691 kb on + strand, within rrmAat 1904.897 kb on - strand, within rrmAat 1904.988 kb on - strand, within rrmAat 1905.238 kb on - strandat 1905.238 kb on - strandat 1905.348 kb on + strand, within cspCat 1905.364 kb on - strand, within cspCat 1905.432 kb on + strand, within cspCat 1905.432 kb on + strand, within cspCat 1905.534 kb on - strand, within yobFat 1905.534 kb on - strand, within yobFat 1905.536 kb on + strand, within yobFat 1905.562 kb on + strand, within yobFat 1905.562 kb on + strand, within yobFat 1905.613 kb on + strandat 1905.619 kb on - strandat 1905.629 kb on - strandat 1905.647 kb on + strandat 1905.751 kb on - strandat 1905.751 kb on - strandat 1905.771 kb on + strandat 1905.782 kb on + strandat 1905.879 kb on - strandat 1905.881 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
remove
1,903,496 - -0.1
1,903,498 - -0.1
1,903,529 + +0.5
1,903,537 - -0.1
1,903,548 + +0.1
1,903,553 + +0.3
1,903,558 + +0.3
1,903,558 + -0.3
1,903,583 + +0.1
1,903,602 - -1.2
1,903,602 - +0.4
1,903,639 - -0.1
1,903,654 - +0.1
1,903,702 + +0.4
1,903,777 - b1821 b1821 0.11 -0.1
1,903,777 - b1821 b1821 0.11 +0.6
1,904,065 - b1821 b1821 0.62 +0.6
1,904,087 - b1821 b1821 0.66 +0.1
1,904,603 + rrmA b1822 0.40 +0.3
1,904,603 + rrmA b1822 0.40 +1.0
1,904,691 + rrmA b1822 0.51 -0.2
1,904,897 - rrmA b1822 0.77 +3.8
1,904,988 - rrmA b1822 0.88 -0.1
1,905,238 - +1.5
1,905,238 - +2.6
1,905,348 + cspC b1823 0.47 +5.5
1,905,364 - cspC b1823 0.54 +4.9
1,905,432 + cspC b1823 0.87 +5.4
1,905,432 + cspC b1823 0.87 +5.8
1,905,534 - yobF b1824 0.43 +1.5
1,905,534 - yobF b1824 0.43 +0.7
1,905,536 + yobF b1824 0.44 +5.4
1,905,562 + yobF b1824 0.62 +5.2
1,905,562 + yobF b1824 0.62 +5.2
1,905,613 + +5.5
1,905,619 - +4.6
1,905,629 - +4.5
1,905,647 + +5.6
1,905,751 - -1.6
1,905,751 - +0.1
1,905,771 + +1.0
1,905,782 + +0.9
1,905,879 - -0.6
1,905,881 - -2.0

Or see this region's nucleotide sequence