Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS21150

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS21145 and RPSI07_RS21150 are separated by 73 nucleotidesRPSI07_RS21150 and RPSI07_RS21155 are separated by 61 nucleotides RPSI07_RS21145: RPSI07_RS21145 - fructose-bisphosphate aldolase class II, at 2,910,778 to 2,911,842 _RS21145 RPSI07_RS21150: RPSI07_RS21150 - pyruvate kinase, at 2,911,916 to 2,913,355 _RS21150 RPSI07_RS21155: RPSI07_RS21155 - phosphoglycerate kinase, at 2,913,417 to 2,914,676 _RS21155 Position (kb) 2911 2912 2913 2914Strain fitness (log2 ratio) -2 -1 0 1at 2911.853 kb on + strandat 2911.854 kb on - strandat 2911.869 kb on - strandat 2911.869 kb on - strandat 2911.883 kb on - strandat 2911.902 kb on + strandat 2912.106 kb on + strand, within RPSI07_RS21150at 2912.797 kb on - strand, within RPSI07_RS21150at 2913.031 kb on - strand, within RPSI07_RS21150at 2913.031 kb on - strand, within RPSI07_RS21150at 2914.204 kb on + strand, within RPSI07_RS21155at 2914.204 kb on + strand, within RPSI07_RS21155at 2914.205 kb on - strand, within RPSI07_RS21155

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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2,911,853 + -0.7
2,911,854 - +1.0
2,911,869 - +0.2
2,911,869 - -2.4
2,911,883 - +1.0
2,911,902 + +0.4
2,912,106 + RPSI07_RS21150 0.13 -0.1
2,912,797 - RPSI07_RS21150 0.61 +1.5
2,913,031 - RPSI07_RS21150 0.77 +0.3
2,913,031 - RPSI07_RS21150 0.77 +0.9
2,914,204 + RPSI07_RS21155 0.62 -0.4
2,914,204 + RPSI07_RS21155 0.62 +0.1
2,914,205 - RPSI07_RS21155 0.63 -1.6

Or see this region's nucleotide sequence