Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS20430

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS20425 and RPSI07_RS20430 are separated by 537 nucleotidesRPSI07_RS20430 and RPSI07_RS20435 are separated by 124 nucleotides RPSI07_RS20425: RPSI07_RS20425 - lytic transglycosylase, at 2,758,662 to 2,759,867 _RS20425 RPSI07_RS20430: RPSI07_RS20430 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 2,760,405 to 2,761,916 _RS20430 RPSI07_RS20435: RPSI07_RS20435 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,762,041 to 2,763,558 _RS20435 Position (kb) 2760 2761 2762Strain fitness (log2 ratio) -2 -1 0 1 2at 2759.528 kb on + strand, within RPSI07_RS20425at 2759.767 kb on + strandat 2759.868 kb on - strandat 2759.868 kb on - strandat 2759.871 kb on + strandat 2759.872 kb on - strandat 2759.949 kb on + strandat 2759.950 kb on - strandat 2759.950 kb on - strandat 2760.106 kb on + strandat 2760.106 kb on + strandat 2760.157 kb on + strandat 2760.157 kb on + strandat 2760.158 kb on - strandat 2760.158 kb on - strandat 2760.158 kb on - strandat 2760.158 kb on - strandat 2760.291 kb on + strandat 2760.340 kb on + strandat 2760.340 kb on + strandat 2761.914 kb on + strandat 2762.051 kb on + strandat 2762.051 kb on + strandat 2762.051 kb on + strandat 2762.052 kb on - strandat 2762.052 kb on - strandat 2762.131 kb on + strandat 2762.131 kb on + strandat 2762.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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2,759,528 + RPSI07_RS20425 0.72 -0.7
2,759,767 + -0.0
2,759,868 - +0.1
2,759,868 - +0.1
2,759,871 + +1.1
2,759,872 - +0.6
2,759,949 + -0.7
2,759,950 - -0.4
2,759,950 - +0.4
2,760,106 + +0.4
2,760,106 + +2.4
2,760,157 + +0.5
2,760,157 + -1.0
2,760,158 - +0.4
2,760,158 - -1.1
2,760,158 - +1.0
2,760,158 - +0.1
2,760,291 + +0.2
2,760,340 + -1.0
2,760,340 + -0.8
2,761,914 + +0.8
2,762,051 + -0.1
2,762,051 + -1.1
2,762,051 + +0.1
2,762,052 - -1.9
2,762,052 - +0.2
2,762,131 + +0.9
2,762,131 + -1.3
2,762,132 - +0.7

Or see this region's nucleotide sequence