Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS10865 and RPSI07_RS10870 are separated by 161 nucleotides RPSI07_RS10870 and RPSI07_RS10875 are separated by 32 nucleotides RPSI07_RS10875 and RPSI07_RS10880 overlap by 4 nucleotides
RPSI07_RS10865: RPSI07_RS10865 - ABC transporter permease, at 634,628 to 635,785
_RS10865
RPSI07_RS10870: RPSI07_RS10870 - PTS fructose transporter subunit IIBC, at 635,947 to 637,659
_RS10870
RPSI07_RS10875: RPSI07_RS10875 - 1-phosphofructokinase, at 637,692 to 638,642
_RS10875
RPSI07_RS10880: RPSI07_RS10880 - phosphoenolpyruvate--protein phosphotransferase, at 638,639 to 641,173
_RS10880
Position (kb) 635
636
637
638 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 635.010 kb on + strand, within RPSI07_RS10865 at 635.011 kb on - strand, within RPSI07_RS10865 at 635.011 kb on - strand, within RPSI07_RS10865 at 635.011 kb on - strand, within RPSI07_RS10865 at 635.011 kb on - strand, within RPSI07_RS10865 at 635.012 kb on + strand, within RPSI07_RS10865 at 635.025 kb on + strand, within RPSI07_RS10865 at 635.025 kb on + strand, within RPSI07_RS10865 at 635.026 kb on - strand, within RPSI07_RS10865 at 635.253 kb on + strand, within RPSI07_RS10865 at 635.254 kb on - strand, within RPSI07_RS10865 at 635.254 kb on - strand, within RPSI07_RS10865 at 635.254 kb on - strand, within RPSI07_RS10865 at 635.254 kb on - strand, within RPSI07_RS10865 at 635.322 kb on + strand, within RPSI07_RS10865 at 635.322 kb on + strand, within RPSI07_RS10865 at 635.385 kb on + strand, within RPSI07_RS10865 at 635.402 kb on + strand, within RPSI07_RS10865 at 635.457 kb on + strand, within RPSI07_RS10865 at 635.458 kb on - strand, within RPSI07_RS10865 at 635.601 kb on + strand, within RPSI07_RS10865 at 635.601 kb on + strand, within RPSI07_RS10865 at 635.602 kb on - strand, within RPSI07_RS10865 at 635.786 kb on - strand at 635.803 kb on + strand at 635.804 kb on - strand at 635.818 kb on - strand at 635.818 kb on - strand at 636.030 kb on - strand at 636.383 kb on + strand, within RPSI07_RS10870 at 636.384 kb on - strand, within RPSI07_RS10870 at 636.384 kb on - strand, within RPSI07_RS10870 at 636.530 kb on + strand, within RPSI07_RS10870 at 636.530 kb on + strand, within RPSI07_RS10870 at 636.530 kb on + strand, within RPSI07_RS10870 at 636.530 kb on + strand, within RPSI07_RS10870 at 636.531 kb on - strand, within RPSI07_RS10870 at 636.531 kb on - strand, within RPSI07_RS10870 at 636.531 kb on - strand, within RPSI07_RS10870 at 636.531 kb on - strand, within RPSI07_RS10870 at 636.532 kb on - strand, within RPSI07_RS10870 at 636.756 kb on - strand, within RPSI07_RS10870 at 636.863 kb on + strand, within RPSI07_RS10870 at 636.864 kb on - strand, within RPSI07_RS10870 at 637.293 kb on + strand, within RPSI07_RS10870 at 637.734 kb on + strand at 637.734 kb on + strand at 638.194 kb on + strand, within RPSI07_RS10875 at 638.194 kb on + strand, within RPSI07_RS10875 at 638.363 kb on + strand, within RPSI07_RS10875
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 635,010 + RPSI07_RS10865 0.33 -1.6 635,011 - RPSI07_RS10865 0.33 +1.4 635,011 - RPSI07_RS10865 0.33 -1.8 635,011 - RPSI07_RS10865 0.33 -0.7 635,011 - RPSI07_RS10865 0.33 +0.3 635,012 + RPSI07_RS10865 0.33 +0.9 635,025 + RPSI07_RS10865 0.34 +0.1 635,025 + RPSI07_RS10865 0.34 -0.2 635,026 - RPSI07_RS10865 0.34 -0.1 635,253 + RPSI07_RS10865 0.54 +0.3 635,254 - RPSI07_RS10865 0.54 -0.2 635,254 - RPSI07_RS10865 0.54 +2.4 635,254 - RPSI07_RS10865 0.54 -1.5 635,254 - RPSI07_RS10865 0.54 -0.5 635,322 + RPSI07_RS10865 0.60 +0.1 635,322 + RPSI07_RS10865 0.60 -0.5 635,385 + RPSI07_RS10865 0.65 +2.8 635,402 + RPSI07_RS10865 0.67 +0.2 635,457 + RPSI07_RS10865 0.72 +0.9 635,458 - RPSI07_RS10865 0.72 +0.8 635,601 + RPSI07_RS10865 0.84 +0.3 635,601 + RPSI07_RS10865 0.84 -1.1 635,602 - RPSI07_RS10865 0.84 -0.2 635,786 - -0.4 635,803 + -0.0 635,804 - +0.8 635,818 - +0.4 635,818 - -0.0 636,030 - +0.1 636,383 + RPSI07_RS10870 0.25 -1.7 636,384 - RPSI07_RS10870 0.26 -0.5 636,384 - RPSI07_RS10870 0.26 -0.7 636,530 + RPSI07_RS10870 0.34 +0.5 636,530 + RPSI07_RS10870 0.34 +1.2 636,530 + RPSI07_RS10870 0.34 -0.6 636,530 + RPSI07_RS10870 0.34 +0.7 636,531 - RPSI07_RS10870 0.34 +1.9 636,531 - RPSI07_RS10870 0.34 -0.6 636,531 - RPSI07_RS10870 0.34 +0.8 636,531 - RPSI07_RS10870 0.34 +1.2 636,532 - RPSI07_RS10870 0.34 +1.9 636,756 - RPSI07_RS10870 0.47 -1.5 636,863 + RPSI07_RS10870 0.53 -0.7 636,864 - RPSI07_RS10870 0.54 -0.5 637,293 + RPSI07_RS10870 0.79 -0.0 637,734 + -2.1 637,734 + -0.4 638,194 + RPSI07_RS10875 0.53 -2.6 638,194 + RPSI07_RS10875 0.53 -0.4 638,363 + RPSI07_RS10875 0.71 -0.8
Or see this region's nucleotide sequence