Strain Fitness in Pseudomonas sp. RS175 around PFR28_04756

Experiment: 5-Aminovaleric carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04755 and PFR28_04756 are separated by 169 nucleotidesPFR28_04756 and PFR28_04757 are separated by 141 nucleotides PFR28_04755: PFR28_04755 - Glutarate-semialdehyde dehydrogenase, at 5,412,358 to 5,413,887 _04755 PFR28_04756: PFR28_04756 - 5-aminovalerate aminotransferase DavT, at 5,414,057 to 5,415,334 _04756 PFR28_04757: PFR28_04757 - Regulator of RpoS, at 5,415,476 to 5,416,693 _04757 Position (kb) 5414 5415 5416Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5413.058 kb on + strand, within PFR28_04755at 5413.058 kb on + strand, within PFR28_04755at 5413.058 kb on + strand, within PFR28_04755at 5413.058 kb on + strand, within PFR28_04755at 5413.059 kb on - strand, within PFR28_04755at 5413.059 kb on - strand, within PFR28_04755at 5413.059 kb on - strand, within PFR28_04755at 5413.059 kb on - strand, within PFR28_04755at 5413.059 kb on - strand, within PFR28_04755at 5413.059 kb on - strand, within PFR28_04755at 5413.130 kb on + strand, within PFR28_04755at 5413.130 kb on + strand, within PFR28_04755at 5413.130 kb on + strand, within PFR28_04755at 5413.131 kb on - strand, within PFR28_04755at 5413.288 kb on + strand, within PFR28_04755at 5413.289 kb on - strand, within PFR28_04755at 5413.289 kb on - strand, within PFR28_04755at 5413.330 kb on + strand, within PFR28_04755at 5413.330 kb on + strand, within PFR28_04755at 5413.330 kb on + strand, within PFR28_04755at 5413.330 kb on + strand, within PFR28_04755at 5413.330 kb on + strand, within PFR28_04755at 5413.330 kb on + strand, within PFR28_04755at 5413.330 kb on + strand, within PFR28_04755at 5413.330 kb on + strand, within PFR28_04755at 5413.330 kb on + strand, within PFR28_04755at 5413.331 kb on - strand, within PFR28_04755at 5413.331 kb on - strand, within PFR28_04755at 5413.331 kb on - strand, within PFR28_04755at 5413.348 kb on + strand, within PFR28_04755at 5413.348 kb on + strand, within PFR28_04755at 5413.349 kb on - strand, within PFR28_04755at 5413.349 kb on - strand, within PFR28_04755at 5413.687 kb on + strand, within PFR28_04755at 5413.688 kb on - strand, within PFR28_04755at 5413.688 kb on - strand, within PFR28_04755at 5413.688 kb on - strand, within PFR28_04755at 5413.693 kb on + strand, within PFR28_04755at 5413.693 kb on + strand, within PFR28_04755at 5413.693 kb on + strand, within PFR28_04755at 5413.693 kb on + strand, within PFR28_04755at 5413.693 kb on + strand, within PFR28_04755at 5413.693 kb on + strand, within PFR28_04755at 5413.693 kb on + strand, within PFR28_04755at 5413.693 kb on + strand, within PFR28_04755at 5413.694 kb on - strand, within PFR28_04755at 5413.694 kb on - strand, within PFR28_04755at 5413.694 kb on - strand, within PFR28_04755at 5413.694 kb on - strand, within PFR28_04755at 5413.694 kb on - strand, within PFR28_04755at 5413.694 kb on - strand, within PFR28_04755at 5413.694 kb on - strand, within PFR28_04755at 5413.694 kb on - strand, within PFR28_04755at 5413.741 kb on + strandat 5413.742 kb on - strandat 5413.837 kb on + strandat 5413.837 kb on + strandat 5413.838 kb on - strandat 5413.838 kb on - strandat 5413.852 kb on + strandat 5413.867 kb on + strandat 5413.867 kb on + strandat 5413.867 kb on + strandat 5413.867 kb on + strandat 5413.868 kb on - strandat 5413.868 kb on - strandat 5413.868 kb on - strandat 5413.868 kb on - strandat 5413.868 kb on - strandat 5413.868 kb on - strandat 5413.868 kb on - strandat 5413.881 kb on + strandat 5413.882 kb on - strandat 5413.882 kb on - strandat 5414.013 kb on + strandat 5414.013 kb on + strandat 5414.021 kb on + strandat 5414.055 kb on + strandat 5414.055 kb on + strandat 5414.055 kb on + strandat 5414.056 kb on - strandat 5414.056 kb on - strandat 5414.056 kb on - strandat 5414.056 kb on - strandat 5414.068 kb on + strandat 5414.306 kb on + strand, within PFR28_04756at 5414.315 kb on + strand, within PFR28_04756at 5414.315 kb on + strand, within PFR28_04756at 5414.315 kb on + strand, within PFR28_04756at 5414.315 kb on + strand, within PFR28_04756at 5414.316 kb on - strand, within PFR28_04756at 5414.316 kb on - strand, within PFR28_04756at 5414.316 kb on - strand, within PFR28_04756at 5414.471 kb on + strand, within PFR28_04756at 5414.472 kb on - strand, within PFR28_04756at 5414.518 kb on - strand, within PFR28_04756at 5414.522 kb on + strand, within PFR28_04756at 5414.523 kb on - strand, within PFR28_04756at 5414.523 kb on - strand, within PFR28_04756at 5414.682 kb on + strand, within PFR28_04756at 5414.702 kb on + strand, within PFR28_04756at 5414.702 kb on + strand, within PFR28_04756at 5414.702 kb on + strand, within PFR28_04756at 5414.702 kb on + strand, within PFR28_04756at 5414.702 kb on + strand, within PFR28_04756at 5414.702 kb on + strand, within PFR28_04756at 5414.702 kb on + strand, within PFR28_04756at 5414.703 kb on - strand, within PFR28_04756at 5414.703 kb on - strand, within PFR28_04756at 5414.703 kb on - strand, within PFR28_04756at 5414.703 kb on - strand, within PFR28_04756at 5414.703 kb on - strand, within PFR28_04756at 5414.703 kb on - strand, within PFR28_04756at 5414.703 kb on - strand, within PFR28_04756at 5414.703 kb on - strand, within PFR28_04756at 5414.703 kb on - strand, within PFR28_04756at 5414.703 kb on - strand, within PFR28_04756at 5414.703 kb on - strand, within PFR28_04756at 5414.703 kb on - strand, within PFR28_04756at 5414.703 kb on - strand, within PFR28_04756at 5414.806 kb on + strand, within PFR28_04756at 5414.807 kb on - strand, within PFR28_04756at 5414.912 kb on + strand, within PFR28_04756at 5414.913 kb on - strand, within PFR28_04756at 5414.913 kb on - strand, within PFR28_04756at 5414.913 kb on - strand, within PFR28_04756at 5414.913 kb on - strand, within PFR28_04756at 5414.913 kb on - strand, within PFR28_04756at 5414.913 kb on - strand, within PFR28_04756at 5414.948 kb on - strand, within PFR28_04756at 5414.951 kb on + strand, within PFR28_04756at 5414.951 kb on + strand, within PFR28_04756at 5414.952 kb on - strand, within PFR28_04756at 5415.083 kb on + strand, within PFR28_04756at 5415.236 kb on + strandat 5415.236 kb on + strandat 5415.236 kb on + strandat 5415.237 kb on - strandat 5415.237 kb on - strandat 5415.443 kb on + strandat 5415.444 kb on - strandat 5415.444 kb on - strandat 5415.454 kb on + strandat 5415.454 kb on + strandat 5415.454 kb on + strandat 5415.454 kb on + strandat 5415.454 kb on + strandat 5415.454 kb on + strandat 5415.454 kb on + strandat 5415.454 kb on + strandat 5415.454 kb on + strandat 5415.454 kb on + strandat 5415.454 kb on + strandat 5415.454 kb on + strandat 5415.454 kb on + strandat 5415.455 kb on - strandat 5415.455 kb on - strandat 5415.455 kb on - strandat 5415.455 kb on - strandat 5415.455 kb on - strandat 5415.455 kb on - strandat 5415.455 kb on - strandat 5415.455 kb on - strandat 5415.492 kb on + strandat 5415.624 kb on + strand, within PFR28_04757at 5415.624 kb on + strand, within PFR28_04757at 5415.624 kb on + strand, within PFR28_04757at 5415.625 kb on - strand, within PFR28_04757at 5415.641 kb on + strand, within PFR28_04757at 5415.641 kb on + strand, within PFR28_04757at 5415.692 kb on - strand, within PFR28_04757at 5415.806 kb on + strand, within PFR28_04757at 5415.864 kb on + strand, within PFR28_04757at 5416.238 kb on + strand, within PFR28_04757at 5416.239 kb on - strand, within PFR28_04757at 5416.239 kb on - strand, within PFR28_04757at 5416.251 kb on - strand, within PFR28_04757at 5416.280 kb on + strand, within PFR28_04757at 5416.280 kb on + strand, within PFR28_04757at 5416.281 kb on - strand, within PFR28_04757at 5416.329 kb on - strand, within PFR28_04757at 5416.329 kb on - strand, within PFR28_04757

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminovaleric carbon 10 mM
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5,413,058 + PFR28_04755 0.46 -3.8
5,413,058 + PFR28_04755 0.46 -2.6
5,413,058 + PFR28_04755 0.46 -0.7
5,413,058 + PFR28_04755 0.46 -4.0
5,413,059 - PFR28_04755 0.46 -1.4
5,413,059 - PFR28_04755 0.46 -3.9
5,413,059 - PFR28_04755 0.46 -2.3
5,413,059 - PFR28_04755 0.46 -2.1
5,413,059 - PFR28_04755 0.46 +1.6
5,413,059 - PFR28_04755 0.46 -3.7
5,413,130 + PFR28_04755 0.50 -1.7
5,413,130 + PFR28_04755 0.50 -4.1
5,413,130 + PFR28_04755 0.50 -1.6
5,413,131 - PFR28_04755 0.51 -2.2
5,413,288 + PFR28_04755 0.61 -3.9
5,413,289 - PFR28_04755 0.61 -3.3
5,413,289 - PFR28_04755 0.61 -3.6
5,413,330 + PFR28_04755 0.64 -2.8
5,413,330 + PFR28_04755 0.64 -3.7
5,413,330 + PFR28_04755 0.64 -3.2
5,413,330 + PFR28_04755 0.64 -3.6
5,413,330 + PFR28_04755 0.64 -2.4
5,413,330 + PFR28_04755 0.64 -4.2
5,413,330 + PFR28_04755 0.64 -1.4
5,413,330 + PFR28_04755 0.64 -3.5
5,413,330 + PFR28_04755 0.64 -2.0
5,413,331 - PFR28_04755 0.64 -1.4
5,413,331 - PFR28_04755 0.64 -2.6
5,413,331 - PFR28_04755 0.64 -3.0
5,413,348 + PFR28_04755 0.65 -3.9
5,413,348 + PFR28_04755 0.65 -2.7
5,413,349 - PFR28_04755 0.65 -4.1
5,413,349 - PFR28_04755 0.65 -2.8
5,413,687 + PFR28_04755 0.87 -1.7
5,413,688 - PFR28_04755 0.87 -2.4
5,413,688 - PFR28_04755 0.87 -2.0
5,413,688 - PFR28_04755 0.87 -4.3
5,413,693 + PFR28_04755 0.87 -3.2
5,413,693 + PFR28_04755 0.87 -2.3
5,413,693 + PFR28_04755 0.87 -4.2
5,413,693 + PFR28_04755 0.87 -2.6
5,413,693 + PFR28_04755 0.87 -4.5
5,413,693 + PFR28_04755 0.87 -2.9
5,413,693 + PFR28_04755 0.87 -0.4
5,413,693 + PFR28_04755 0.87 -2.0
5,413,694 - PFR28_04755 0.87 +0.6
5,413,694 - PFR28_04755 0.87 -1.3
5,413,694 - PFR28_04755 0.87 -2.0
5,413,694 - PFR28_04755 0.87 -3.7
5,413,694 - PFR28_04755 0.87 -2.6
5,413,694 - PFR28_04755 0.87 -2.1
5,413,694 - PFR28_04755 0.87 -2.8
5,413,694 - PFR28_04755 0.87 -4.3
5,413,741 + -3.2
5,413,742 - -4.6
5,413,837 + -3.6
5,413,837 + -2.0
5,413,838 - -3.4
5,413,838 - -4.0
5,413,852 + -2.6
5,413,867 + -3.9
5,413,867 + -3.0
5,413,867 + -2.2
5,413,867 + -2.9
5,413,868 - -3.2
5,413,868 - -1.8
5,413,868 - -3.6
5,413,868 - -3.2
5,413,868 - -2.7
5,413,868 - -3.7
5,413,868 - -3.4
5,413,881 + -3.4
5,413,882 - -4.7
5,413,882 - -4.3
5,414,013 + -0.4
5,414,013 + -1.0
5,414,021 + -1.6
5,414,055 + -1.2
5,414,055 + -1.0
5,414,055 + -3.7
5,414,056 - -4.0
5,414,056 - -2.7
5,414,056 - -3.7
5,414,056 - -2.1
5,414,068 + -2.7
5,414,306 + PFR28_04756 0.19 -2.2
5,414,315 + PFR28_04756 0.20 -3.0
5,414,315 + PFR28_04756 0.20 -4.3
5,414,315 + PFR28_04756 0.20 -1.2
5,414,315 + PFR28_04756 0.20 -4.1
5,414,316 - PFR28_04756 0.20 -4.8
5,414,316 - PFR28_04756 0.20 -2.3
5,414,316 - PFR28_04756 0.20 -3.8
5,414,471 + PFR28_04756 0.32 -2.8
5,414,472 - PFR28_04756 0.32 -3.9
5,414,518 - PFR28_04756 0.36 -2.0
5,414,522 + PFR28_04756 0.36 -2.2
5,414,523 - PFR28_04756 0.36 -3.8
5,414,523 - PFR28_04756 0.36 -2.2
5,414,682 + PFR28_04756 0.49 -3.4
5,414,702 + PFR28_04756 0.50 -2.5
5,414,702 + PFR28_04756 0.50 -1.8
5,414,702 + PFR28_04756 0.50 -2.1
5,414,702 + PFR28_04756 0.50 -3.4
5,414,702 + PFR28_04756 0.50 -3.5
5,414,702 + PFR28_04756 0.50 -0.4
5,414,702 + PFR28_04756 0.50 -4.2
5,414,703 - PFR28_04756 0.51 -4.1
5,414,703 - PFR28_04756 0.51 -4.6
5,414,703 - PFR28_04756 0.51 -4.9
5,414,703 - PFR28_04756 0.51 -0.7
5,414,703 - PFR28_04756 0.51 -2.6
5,414,703 - PFR28_04756 0.51 -3.7
5,414,703 - PFR28_04756 0.51 -1.1
5,414,703 - PFR28_04756 0.51 -2.8
5,414,703 - PFR28_04756 0.51 -3.2
5,414,703 - PFR28_04756 0.51 -0.2
5,414,703 - PFR28_04756 0.51 -3.8
5,414,703 - PFR28_04756 0.51 -3.2
5,414,703 - PFR28_04756 0.51 -1.6
5,414,806 + PFR28_04756 0.59 -3.8
5,414,807 - PFR28_04756 0.59 -1.2
5,414,912 + PFR28_04756 0.67 -4.7
5,414,913 - PFR28_04756 0.67 -3.1
5,414,913 - PFR28_04756 0.67 -4.6
5,414,913 - PFR28_04756 0.67 -3.9
5,414,913 - PFR28_04756 0.67 -3.2
5,414,913 - PFR28_04756 0.67 -3.6
5,414,913 - PFR28_04756 0.67 -2.2
5,414,948 - PFR28_04756 0.70 -3.6
5,414,951 + PFR28_04756 0.70 -3.9
5,414,951 + PFR28_04756 0.70 -3.2
5,414,952 - PFR28_04756 0.70 -3.4
5,415,083 + PFR28_04756 0.80 -3.5
5,415,236 + -1.2
5,415,236 + -3.8
5,415,236 + -1.7
5,415,237 - -3.8
5,415,237 - -3.2
5,415,443 + -0.4
5,415,444 - -0.5
5,415,444 - +0.4
5,415,454 + +0.2
5,415,454 + +0.6
5,415,454 + +0.3
5,415,454 + +0.5
5,415,454 + -1.2
5,415,454 + +0.3
5,415,454 + +2.6
5,415,454 + +0.0
5,415,454 + +0.3
5,415,454 + -0.7
5,415,454 + +0.4
5,415,454 + -1.2
5,415,454 + -0.6
5,415,455 - -0.1
5,415,455 - +0.3
5,415,455 - +0.4
5,415,455 - -2.6
5,415,455 - -0.3
5,415,455 - +0.9
5,415,455 - -0.6
5,415,455 - +0.2
5,415,492 + +0.4
5,415,624 + PFR28_04757 0.12 -0.2
5,415,624 + PFR28_04757 0.12 +0.1
5,415,624 + PFR28_04757 0.12 +1.1
5,415,625 - PFR28_04757 0.12 -0.2
5,415,641 + PFR28_04757 0.14 -0.3
5,415,641 + PFR28_04757 0.14 -1.0
5,415,692 - PFR28_04757 0.18 +0.3
5,415,806 + PFR28_04757 0.27 +0.7
5,415,864 + PFR28_04757 0.32 -0.6
5,416,238 + PFR28_04757 0.63 -2.5
5,416,239 - PFR28_04757 0.63 +0.1
5,416,239 - PFR28_04757 0.63 +0.0
5,416,251 - PFR28_04757 0.64 +0.6
5,416,280 + PFR28_04757 0.66 -0.7
5,416,280 + PFR28_04757 0.66 +1.0
5,416,281 - PFR28_04757 0.66 -0.3
5,416,329 - PFR28_04757 0.70 -0.2
5,416,329 - PFR28_04757 0.70 -0.2

Or see this region's nucleotide sequence