Experiment: 5-Aminovaleric carbon 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04755 and PFR28_04756 are separated by 169 nucleotides PFR28_04756 and PFR28_04757 are separated by 141 nucleotides
PFR28_04755: PFR28_04755 - Glutarate-semialdehyde dehydrogenase, at 5,412,358 to 5,413,887
_04755
PFR28_04756: PFR28_04756 - 5-aminovalerate aminotransferase DavT, at 5,414,057 to 5,415,334
_04756
PFR28_04757: PFR28_04757 - Regulator of RpoS, at 5,415,476 to 5,416,693
_04757
Position (kb)
5414
5415
5416 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 5413.058 kb on + strand, within PFR28_04755 at 5413.058 kb on + strand, within PFR28_04755 at 5413.058 kb on + strand, within PFR28_04755 at 5413.058 kb on + strand, within PFR28_04755 at 5413.059 kb on - strand, within PFR28_04755 at 5413.059 kb on - strand, within PFR28_04755 at 5413.059 kb on - strand, within PFR28_04755 at 5413.059 kb on - strand, within PFR28_04755 at 5413.059 kb on - strand, within PFR28_04755 at 5413.059 kb on - strand, within PFR28_04755 at 5413.130 kb on + strand, within PFR28_04755 at 5413.130 kb on + strand, within PFR28_04755 at 5413.130 kb on + strand, within PFR28_04755 at 5413.131 kb on - strand, within PFR28_04755 at 5413.288 kb on + strand, within PFR28_04755 at 5413.289 kb on - strand, within PFR28_04755 at 5413.289 kb on - strand, within PFR28_04755 at 5413.330 kb on + strand, within PFR28_04755 at 5413.330 kb on + strand, within PFR28_04755 at 5413.330 kb on + strand, within PFR28_04755 at 5413.330 kb on + strand, within PFR28_04755 at 5413.330 kb on + strand, within PFR28_04755 at 5413.330 kb on + strand, within PFR28_04755 at 5413.330 kb on + strand, within PFR28_04755 at 5413.330 kb on + strand, within PFR28_04755 at 5413.330 kb on + strand, within PFR28_04755 at 5413.331 kb on - strand, within PFR28_04755 at 5413.331 kb on - strand, within PFR28_04755 at 5413.331 kb on - strand, within PFR28_04755 at 5413.348 kb on + strand, within PFR28_04755 at 5413.348 kb on + strand, within PFR28_04755 at 5413.349 kb on - strand, within PFR28_04755 at 5413.349 kb on - strand, within PFR28_04755 at 5413.687 kb on + strand, within PFR28_04755 at 5413.688 kb on - strand, within PFR28_04755 at 5413.688 kb on - strand, within PFR28_04755 at 5413.688 kb on - strand, within PFR28_04755 at 5413.693 kb on + strand, within PFR28_04755 at 5413.693 kb on + strand, within PFR28_04755 at 5413.693 kb on + strand, within PFR28_04755 at 5413.693 kb on + strand, within PFR28_04755 at 5413.693 kb on + strand, within PFR28_04755 at 5413.693 kb on + strand, within PFR28_04755 at 5413.693 kb on + strand, within PFR28_04755 at 5413.693 kb on + strand, within PFR28_04755 at 5413.694 kb on - strand, within PFR28_04755 at 5413.694 kb on - strand, within PFR28_04755 at 5413.694 kb on - strand, within PFR28_04755 at 5413.694 kb on - strand, within PFR28_04755 at 5413.694 kb on - strand, within PFR28_04755 at 5413.694 kb on - strand, within PFR28_04755 at 5413.694 kb on - strand, within PFR28_04755 at 5413.694 kb on - strand, within PFR28_04755 at 5413.741 kb on + strand at 5413.742 kb on - strand at 5413.837 kb on + strand at 5413.837 kb on + strand at 5413.838 kb on - strand at 5413.838 kb on - strand at 5413.852 kb on + strand at 5413.867 kb on + strand at 5413.867 kb on + strand at 5413.867 kb on + strand at 5413.867 kb on + strand at 5413.868 kb on - strand at 5413.868 kb on - strand at 5413.868 kb on - strand at 5413.868 kb on - strand at 5413.868 kb on - strand at 5413.868 kb on - strand at 5413.868 kb on - strand at 5413.881 kb on + strand at 5413.882 kb on - strand at 5413.882 kb on - strand at 5414.013 kb on + strand at 5414.013 kb on + strand at 5414.021 kb on + strand at 5414.055 kb on + strand at 5414.055 kb on + strand at 5414.055 kb on + strand at 5414.056 kb on - strand at 5414.056 kb on - strand at 5414.056 kb on - strand at 5414.056 kb on - strand at 5414.068 kb on + strand at 5414.306 kb on + strand, within PFR28_04756 at 5414.315 kb on + strand, within PFR28_04756 at 5414.315 kb on + strand, within PFR28_04756 at 5414.315 kb on + strand, within PFR28_04756 at 5414.315 kb on + strand, within PFR28_04756 at 5414.316 kb on - strand, within PFR28_04756 at 5414.316 kb on - strand, within PFR28_04756 at 5414.316 kb on - strand, within PFR28_04756 at 5414.471 kb on + strand, within PFR28_04756 at 5414.472 kb on - strand, within PFR28_04756 at 5414.518 kb on - strand, within PFR28_04756 at 5414.522 kb on + strand, within PFR28_04756 at 5414.523 kb on - strand, within PFR28_04756 at 5414.523 kb on - strand, within PFR28_04756 at 5414.682 kb on + strand, within PFR28_04756 at 5414.702 kb on + strand, within PFR28_04756 at 5414.702 kb on + strand, within PFR28_04756 at 5414.702 kb on + strand, within PFR28_04756 at 5414.702 kb on + strand, within PFR28_04756 at 5414.702 kb on + strand, within PFR28_04756 at 5414.702 kb on + strand, within PFR28_04756 at 5414.702 kb on + strand, within PFR28_04756 at 5414.703 kb on - strand, within PFR28_04756 at 5414.703 kb on - strand, within PFR28_04756 at 5414.703 kb on - strand, within PFR28_04756 at 5414.703 kb on - strand, within PFR28_04756 at 5414.703 kb on - strand, within PFR28_04756 at 5414.703 kb on - strand, within PFR28_04756 at 5414.703 kb on - strand, within PFR28_04756 at 5414.703 kb on - strand, within PFR28_04756 at 5414.703 kb on - strand, within PFR28_04756 at 5414.703 kb on - strand, within PFR28_04756 at 5414.703 kb on - strand, within PFR28_04756 at 5414.703 kb on - strand, within PFR28_04756 at 5414.703 kb on - strand, within PFR28_04756 at 5414.806 kb on + strand, within PFR28_04756 at 5414.807 kb on - strand, within PFR28_04756 at 5414.912 kb on + strand, within PFR28_04756 at 5414.913 kb on - strand, within PFR28_04756 at 5414.913 kb on - strand, within PFR28_04756 at 5414.913 kb on - strand, within PFR28_04756 at 5414.913 kb on - strand, within PFR28_04756 at 5414.913 kb on - strand, within PFR28_04756 at 5414.913 kb on - strand, within PFR28_04756 at 5414.948 kb on - strand, within PFR28_04756 at 5414.951 kb on + strand, within PFR28_04756 at 5414.951 kb on + strand, within PFR28_04756 at 5414.952 kb on - strand, within PFR28_04756 at 5415.083 kb on + strand, within PFR28_04756 at 5415.236 kb on + strand at 5415.236 kb on + strand at 5415.236 kb on + strand at 5415.237 kb on - strand at 5415.237 kb on - strand at 5415.443 kb on + strand at 5415.444 kb on - strand at 5415.444 kb on - strand at 5415.454 kb on + strand at 5415.454 kb on + strand at 5415.454 kb on + strand at 5415.454 kb on + strand at 5415.454 kb on + strand at 5415.454 kb on + strand at 5415.454 kb on + strand at 5415.454 kb on + strand at 5415.454 kb on + strand at 5415.454 kb on + strand at 5415.454 kb on + strand at 5415.454 kb on + strand at 5415.454 kb on + strand at 5415.455 kb on - strand at 5415.455 kb on - strand at 5415.455 kb on - strand at 5415.455 kb on - strand at 5415.455 kb on - strand at 5415.455 kb on - strand at 5415.455 kb on - strand at 5415.455 kb on - strand at 5415.492 kb on + strand at 5415.624 kb on + strand, within PFR28_04757 at 5415.624 kb on + strand, within PFR28_04757 at 5415.624 kb on + strand, within PFR28_04757 at 5415.625 kb on - strand, within PFR28_04757 at 5415.641 kb on + strand, within PFR28_04757 at 5415.641 kb on + strand, within PFR28_04757 at 5415.692 kb on - strand, within PFR28_04757 at 5415.806 kb on + strand, within PFR28_04757 at 5415.864 kb on + strand, within PFR28_04757 at 5416.238 kb on + strand, within PFR28_04757 at 5416.239 kb on - strand, within PFR28_04757 at 5416.239 kb on - strand, within PFR28_04757 at 5416.251 kb on - strand, within PFR28_04757 at 5416.280 kb on + strand, within PFR28_04757 at 5416.280 kb on + strand, within PFR28_04757 at 5416.281 kb on - strand, within PFR28_04757 at 5416.329 kb on - strand, within PFR28_04757 at 5416.329 kb on - strand, within PFR28_04757
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric carbon 10 mM remove 5,413,058 + PFR28_04755 0.46 -3.8 5,413,058 + PFR28_04755 0.46 -2.6 5,413,058 + PFR28_04755 0.46 -0.7 5,413,058 + PFR28_04755 0.46 -4.0 5,413,059 - PFR28_04755 0.46 -1.4 5,413,059 - PFR28_04755 0.46 -3.9 5,413,059 - PFR28_04755 0.46 -2.3 5,413,059 - PFR28_04755 0.46 -2.1 5,413,059 - PFR28_04755 0.46 +1.6 5,413,059 - PFR28_04755 0.46 -3.7 5,413,130 + PFR28_04755 0.50 -1.7 5,413,130 + PFR28_04755 0.50 -4.1 5,413,130 + PFR28_04755 0.50 -1.6 5,413,131 - PFR28_04755 0.51 -2.2 5,413,288 + PFR28_04755 0.61 -3.9 5,413,289 - PFR28_04755 0.61 -3.3 5,413,289 - PFR28_04755 0.61 -3.6 5,413,330 + PFR28_04755 0.64 -2.8 5,413,330 + PFR28_04755 0.64 -3.7 5,413,330 + PFR28_04755 0.64 -3.2 5,413,330 + PFR28_04755 0.64 -3.6 5,413,330 + PFR28_04755 0.64 -2.4 5,413,330 + PFR28_04755 0.64 -4.2 5,413,330 + PFR28_04755 0.64 -1.4 5,413,330 + PFR28_04755 0.64 -3.5 5,413,330 + PFR28_04755 0.64 -2.0 5,413,331 - PFR28_04755 0.64 -1.4 5,413,331 - PFR28_04755 0.64 -2.6 5,413,331 - PFR28_04755 0.64 -3.0 5,413,348 + PFR28_04755 0.65 -3.9 5,413,348 + PFR28_04755 0.65 -2.7 5,413,349 - PFR28_04755 0.65 -4.1 5,413,349 - PFR28_04755 0.65 -2.8 5,413,687 + PFR28_04755 0.87 -1.7 5,413,688 - PFR28_04755 0.87 -2.4 5,413,688 - PFR28_04755 0.87 -2.0 5,413,688 - PFR28_04755 0.87 -4.3 5,413,693 + PFR28_04755 0.87 -3.2 5,413,693 + PFR28_04755 0.87 -2.3 5,413,693 + PFR28_04755 0.87 -4.2 5,413,693 + PFR28_04755 0.87 -2.6 5,413,693 + PFR28_04755 0.87 -4.5 5,413,693 + PFR28_04755 0.87 -2.9 5,413,693 + PFR28_04755 0.87 -0.4 5,413,693 + PFR28_04755 0.87 -2.0 5,413,694 - PFR28_04755 0.87 +0.6 5,413,694 - PFR28_04755 0.87 -1.3 5,413,694 - PFR28_04755 0.87 -2.0 5,413,694 - PFR28_04755 0.87 -3.7 5,413,694 - PFR28_04755 0.87 -2.6 5,413,694 - PFR28_04755 0.87 -2.1 5,413,694 - PFR28_04755 0.87 -2.8 5,413,694 - PFR28_04755 0.87 -4.3 5,413,741 + -3.2 5,413,742 - -4.6 5,413,837 + -3.6 5,413,837 + -2.0 5,413,838 - -3.4 5,413,838 - -4.0 5,413,852 + -2.6 5,413,867 + -3.9 5,413,867 + -3.0 5,413,867 + -2.2 5,413,867 + -2.9 5,413,868 - -3.2 5,413,868 - -1.8 5,413,868 - -3.6 5,413,868 - -3.2 5,413,868 - -2.7 5,413,868 - -3.7 5,413,868 - -3.4 5,413,881 + -3.4 5,413,882 - -4.7 5,413,882 - -4.3 5,414,013 + -0.4 5,414,013 + -1.0 5,414,021 + -1.6 5,414,055 + -1.2 5,414,055 + -1.0 5,414,055 + -3.7 5,414,056 - -4.0 5,414,056 - -2.7 5,414,056 - -3.7 5,414,056 - -2.1 5,414,068 + -2.7 5,414,306 + PFR28_04756 0.19 -2.2 5,414,315 + PFR28_04756 0.20 -3.0 5,414,315 + PFR28_04756 0.20 -4.3 5,414,315 + PFR28_04756 0.20 -1.2 5,414,315 + PFR28_04756 0.20 -4.1 5,414,316 - PFR28_04756 0.20 -4.8 5,414,316 - PFR28_04756 0.20 -2.3 5,414,316 - PFR28_04756 0.20 -3.8 5,414,471 + PFR28_04756 0.32 -2.8 5,414,472 - PFR28_04756 0.32 -3.9 5,414,518 - PFR28_04756 0.36 -2.0 5,414,522 + PFR28_04756 0.36 -2.2 5,414,523 - PFR28_04756 0.36 -3.8 5,414,523 - PFR28_04756 0.36 -2.2 5,414,682 + PFR28_04756 0.49 -3.4 5,414,702 + PFR28_04756 0.50 -2.5 5,414,702 + PFR28_04756 0.50 -1.8 5,414,702 + PFR28_04756 0.50 -2.1 5,414,702 + PFR28_04756 0.50 -3.4 5,414,702 + PFR28_04756 0.50 -3.5 5,414,702 + PFR28_04756 0.50 -0.4 5,414,702 + PFR28_04756 0.50 -4.2 5,414,703 - PFR28_04756 0.51 -4.1 5,414,703 - PFR28_04756 0.51 -4.6 5,414,703 - PFR28_04756 0.51 -4.9 5,414,703 - PFR28_04756 0.51 -0.7 5,414,703 - PFR28_04756 0.51 -2.6 5,414,703 - PFR28_04756 0.51 -3.7 5,414,703 - PFR28_04756 0.51 -1.1 5,414,703 - PFR28_04756 0.51 -2.8 5,414,703 - PFR28_04756 0.51 -3.2 5,414,703 - PFR28_04756 0.51 -0.2 5,414,703 - PFR28_04756 0.51 -3.8 5,414,703 - PFR28_04756 0.51 -3.2 5,414,703 - PFR28_04756 0.51 -1.6 5,414,806 + PFR28_04756 0.59 -3.8 5,414,807 - PFR28_04756 0.59 -1.2 5,414,912 + PFR28_04756 0.67 -4.7 5,414,913 - PFR28_04756 0.67 -3.1 5,414,913 - PFR28_04756 0.67 -4.6 5,414,913 - PFR28_04756 0.67 -3.9 5,414,913 - PFR28_04756 0.67 -3.2 5,414,913 - PFR28_04756 0.67 -3.6 5,414,913 - PFR28_04756 0.67 -2.2 5,414,948 - PFR28_04756 0.70 -3.6 5,414,951 + PFR28_04756 0.70 -3.9 5,414,951 + PFR28_04756 0.70 -3.2 5,414,952 - PFR28_04756 0.70 -3.4 5,415,083 + PFR28_04756 0.80 -3.5 5,415,236 + -1.2 5,415,236 + -3.8 5,415,236 + -1.7 5,415,237 - -3.8 5,415,237 - -3.2 5,415,443 + -0.4 5,415,444 - -0.5 5,415,444 - +0.4 5,415,454 + +0.2 5,415,454 + +0.6 5,415,454 + +0.3 5,415,454 + +0.5 5,415,454 + -1.2 5,415,454 + +0.3 5,415,454 + +2.6 5,415,454 + +0.0 5,415,454 + +0.3 5,415,454 + -0.7 5,415,454 + +0.4 5,415,454 + -1.2 5,415,454 + -0.6 5,415,455 - -0.1 5,415,455 - +0.3 5,415,455 - +0.4 5,415,455 - -2.6 5,415,455 - -0.3 5,415,455 - +0.9 5,415,455 - -0.6 5,415,455 - +0.2 5,415,492 + +0.4 5,415,624 + PFR28_04757 0.12 -0.2 5,415,624 + PFR28_04757 0.12 +0.1 5,415,624 + PFR28_04757 0.12 +1.1 5,415,625 - PFR28_04757 0.12 -0.2 5,415,641 + PFR28_04757 0.14 -0.3 5,415,641 + PFR28_04757 0.14 -1.0 5,415,692 - PFR28_04757 0.18 +0.3 5,415,806 + PFR28_04757 0.27 +0.7 5,415,864 + PFR28_04757 0.32 -0.6 5,416,238 + PFR28_04757 0.63 -2.5 5,416,239 - PFR28_04757 0.63 +0.1 5,416,239 - PFR28_04757 0.63 +0.0 5,416,251 - PFR28_04757 0.64 +0.6 5,416,280 + PFR28_04757 0.66 -0.7 5,416,280 + PFR28_04757 0.66 +1.0 5,416,281 - PFR28_04757 0.66 -0.3 5,416,329 - PFR28_04757 0.70 -0.2 5,416,329 - PFR28_04757 0.70 -0.2
Or see this region's nucleotide sequence