Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS14145 and ABIE41_RS14150 are separated by 7 nucleotides ABIE41_RS14150 and ABIE41_RS14155 are separated by 83 nucleotides ABIE41_RS14155 and ABIE41_RS14160 are separated by 150 nucleotides
ABIE41_RS14145: ABIE41_RS14145 - DUF2336 domain-containing protein, at 2,898,097 to 2,899,311
_RS14145
ABIE41_RS14150: ABIE41_RS14150 - carboxymuconolactone decarboxylase family protein, at 2,899,319 to 2,899,735
_RS14150
ABIE41_RS14155: ABIE41_RS14155 - NAD kinase, at 2,899,819 to 2,900,592
_RS14155
ABIE41_RS14160: ABIE41_RS14160 - MBL fold metallo-hydrolase, at 2,900,743 to 2,901,726
_RS14160
Position (kb) 2899
2900
2901 Strain fitness (log2 ratio) -1
0
1
2 at 2899.244 kb on - strand at 2899.643 kb on + strand, within ABIE41_RS14150 at 2899.823 kb on + strand at 2900.638 kb on - strand at 2900.832 kb on - strand at 2900.832 kb on - strand at 2901.030 kb on + strand, within ABIE41_RS14160 at 2901.584 kb on + strand, within ABIE41_RS14160 at 2901.585 kb on - strand, within ABIE41_RS14160 at 2901.591 kb on - strand, within ABIE41_RS14160
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 2,899,244 - -0.5 2,899,643 + ABIE41_RS14150 0.78 +2.2 2,899,823 + +0.0 2,900,638 - +2.4 2,900,832 - -0.9 2,900,832 - -0.4 2,901,030 + ABIE41_RS14160 0.29 +0.5 2,901,584 + ABIE41_RS14160 0.85 +0.2 2,901,585 - ABIE41_RS14160 0.86 -0.6 2,901,591 - ABIE41_RS14160 0.86 -0.6
Or see this region's nucleotide sequence