Strain Fitness in Bosea sp. OAE506 around ABIE41_RS00300

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS00285 and ABIE41_RS00290 overlap by 1 nucleotidesABIE41_RS00290 and ABIE41_RS00295 are separated by 145 nucleotidesABIE41_RS00295 and ABIE41_RS00300 are separated by 28 nucleotidesABIE41_RS00300 and ABIE41_RS00305 are separated by 132 nucleotides ABIE41_RS00285: ABIE41_RS00285 - ornithine cyclodeaminase family protein, at 48,570 to 49,520 _RS00285 ABIE41_RS00290: ABIE41_RS00290 - LapA family protein, at 49,520 to 49,858 _RS00290 ABIE41_RS00295: ABIE41_RS00295 - integration host factor subunit beta, at 50,004 to 50,288 _RS00295 ABIE41_RS00300: ABIE41_RS00300 - signal peptide peptidase SppA, at 50,317 to 51,285 _RS00300 ABIE41_RS00305: ABIE41_RS00305 - Hsp70 family protein, at 51,418 to 52,707 _RS00305 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2 3at 49.328 kb on + strand, within ABIE41_RS00285at 49.330 kb on + strand, within ABIE41_RS00285at 49.729 kb on - strand, within ABIE41_RS00290at 49.729 kb on - strand, within ABIE41_RS00290at 50.300 kb on - strandat 50.310 kb on - strandat 50.310 kb on - strandat 50.687 kb on + strand, within ABIE41_RS00300at 50.687 kb on + strand, within ABIE41_RS00300at 50.687 kb on + strand, within ABIE41_RS00300at 50.687 kb on + strand, within ABIE41_RS00300at 50.688 kb on - strand, within ABIE41_RS00300at 50.688 kb on - strand, within ABIE41_RS00300at 50.688 kb on - strand, within ABIE41_RS00300at 50.984 kb on + strand, within ABIE41_RS00300at 50.984 kb on + strand, within ABIE41_RS00300at 50.984 kb on + strand, within ABIE41_RS00300at 50.984 kb on + strand, within ABIE41_RS00300at 50.984 kb on + strand, within ABIE41_RS00300at 50.984 kb on + strand, within ABIE41_RS00300at 50.985 kb on - strand, within ABIE41_RS00300at 50.985 kb on - strand, within ABIE41_RS00300at 50.985 kb on - strand, within ABIE41_RS00300at 50.985 kb on - strand, within ABIE41_RS00300at 51.378 kb on + strandat 51.378 kb on + strandat 51.379 kb on - strandat 51.379 kb on - strandat 51.783 kb on - strand, within ABIE41_RS00305at 51.783 kb on - strand, within ABIE41_RS00305at 51.783 kb on - strand, within ABIE41_RS00305at 51.803 kb on + strand, within ABIE41_RS00305at 51.803 kb on + strand, within ABIE41_RS00305at 51.935 kb on + strand, within ABIE41_RS00305at 51.936 kb on - strand, within ABIE41_RS00305at 51.936 kb on - strand, within ABIE41_RS00305at 51.974 kb on + strand, within ABIE41_RS00305at 51.975 kb on - strand, within ABIE41_RS00305at 51.982 kb on - strand, within ABIE41_RS00305at 52.187 kb on + strand, within ABIE41_RS00305at 52.187 kb on + strand, within ABIE41_RS00305at 52.188 kb on - strand, within ABIE41_RS00305at 52.193 kb on + strand, within ABIE41_RS00305at 52.193 kb on + strand, within ABIE41_RS00305at 52.214 kb on + strand, within ABIE41_RS00305at 52.215 kb on - strand, within ABIE41_RS00305at 52.215 kb on - strand, within ABIE41_RS00305at 52.215 kb on - strand, within ABIE41_RS00305at 52.250 kb on + strand, within ABIE41_RS00305at 52.251 kb on - strand, within ABIE41_RS00305at 52.251 kb on - strand, within ABIE41_RS00305

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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49,328 + ABIE41_RS00285 0.80 -0.0
49,330 + ABIE41_RS00285 0.80 +1.4
49,729 - ABIE41_RS00290 0.62 -0.7
49,729 - ABIE41_RS00290 0.62 -1.9
50,300 - -0.8
50,310 - -0.1
50,310 - -0.2
50,687 + ABIE41_RS00300 0.38 -1.6
50,687 + ABIE41_RS00300 0.38 +0.1
50,687 + ABIE41_RS00300 0.38 -0.3
50,687 + ABIE41_RS00300 0.38 -0.5
50,688 - ABIE41_RS00300 0.38 -2.4
50,688 - ABIE41_RS00300 0.38 -1.0
50,688 - ABIE41_RS00300 0.38 +0.5
50,984 + ABIE41_RS00300 0.69 +0.6
50,984 + ABIE41_RS00300 0.69 -0.9
50,984 + ABIE41_RS00300 0.69 -0.3
50,984 + ABIE41_RS00300 0.69 -0.8
50,984 + ABIE41_RS00300 0.69 -1.5
50,984 + ABIE41_RS00300 0.69 +0.2
50,985 - ABIE41_RS00300 0.69 -1.8
50,985 - ABIE41_RS00300 0.69 +0.2
50,985 - ABIE41_RS00300 0.69 +1.0
50,985 - ABIE41_RS00300 0.69 -0.6
51,378 + -2.1
51,378 + -2.0
51,379 - -0.1
51,379 - -0.4
51,783 - ABIE41_RS00305 0.28 +0.2
51,783 - ABIE41_RS00305 0.28 -1.6
51,783 - ABIE41_RS00305 0.28 +0.1
51,803 + ABIE41_RS00305 0.30 -2.6
51,803 + ABIE41_RS00305 0.30 -0.1
51,935 + ABIE41_RS00305 0.40 +1.7
51,936 - ABIE41_RS00305 0.40 +3.4
51,936 - ABIE41_RS00305 0.40 -0.4
51,974 + ABIE41_RS00305 0.43 -1.2
51,975 - ABIE41_RS00305 0.43 -0.0
51,982 - ABIE41_RS00305 0.44 -0.3
52,187 + ABIE41_RS00305 0.60 +1.8
52,187 + ABIE41_RS00305 0.60 +0.1
52,188 - ABIE41_RS00305 0.60 -0.9
52,193 + ABIE41_RS00305 0.60 +0.1
52,193 + ABIE41_RS00305 0.60 -1.4
52,214 + ABIE41_RS00305 0.62 -0.8
52,215 - ABIE41_RS00305 0.62 +0.1
52,215 - ABIE41_RS00305 0.62 +0.8
52,215 - ABIE41_RS00305 0.62 +0.1
52,250 + ABIE41_RS00305 0.64 +0.5
52,251 - ABIE41_RS00305 0.65 +0.3
52,251 - ABIE41_RS00305 0.65 -2.4

Or see this region's nucleotide sequence