Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30515 and ABIE40_RS30520 are separated by 924 nucleotides ABIE40_RS30520 and ABIE40_RS30525 are separated by 211 nucleotides ABIE40_RS30525 and ABIE40_RS30530 are separated by 63 nucleotides
ABIE40_RS30515: ABIE40_RS30515 - glycogen debranching protein GlgX, at 786,636 to 788,720
_RS30515
ABIE40_RS30520: ABIE40_RS30520 - hypothetical protein, at 789,645 to 789,863
_RS30520
ABIE40_RS30525: ABIE40_RS30525 - hydrolase, at 790,075 to 790,560
_RS30525
ABIE40_RS30530: ABIE40_RS30530 - MOSC domain-containing protein, at 790,624 to 791,166
_RS30530
Position (kb) 789
790 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 788.705 kb on + strand at 788.905 kb on + strand at 788.961 kb on + strand at 789.047 kb on - strand at 789.102 kb on + strand at 789.102 kb on + strand at 789.182 kb on + strand at 789.408 kb on + strand at 789.409 kb on - strand at 789.522 kb on + strand at 789.523 kb on - strand at 789.646 kb on + strand at 789.720 kb on + strand, within ABIE40_RS30520 at 789.804 kb on + strand, within ABIE40_RS30520 at 789.910 kb on + strand at 789.910 kb on + strand at 789.910 kb on + strand at 789.943 kb on - strand at 789.943 kb on - strand at 789.952 kb on + strand at 789.953 kb on - strand at 790.021 kb on - strand at 790.021 kb on - strand at 790.151 kb on + strand, within ABIE40_RS30525 at 790.151 kb on + strand, within ABIE40_RS30525 at 790.152 kb on - strand, within ABIE40_RS30525 at 790.183 kb on + strand, within ABIE40_RS30525 at 790.184 kb on - strand, within ABIE40_RS30525 at 790.237 kb on + strand, within ABIE40_RS30525 at 790.238 kb on - strand, within ABIE40_RS30525 at 790.486 kb on - strand, within ABIE40_RS30525 at 790.486 kb on - strand, within ABIE40_RS30525 at 790.567 kb on + strand at 790.837 kb on + strand, within ABIE40_RS30530
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 788,705 + -0.5 788,905 + -3.1 788,961 + -0.2 789,047 - -2.2 789,102 + -0.6 789,102 + -1.3 789,182 + -1.3 789,408 + -3.3 789,409 - +5.1 789,522 + +1.3 789,523 - -2.6 789,646 + +1.8 789,720 + ABIE40_RS30520 0.34 +0.7 789,804 + ABIE40_RS30520 0.73 -2.2 789,910 + +1.7 789,910 + -0.4 789,910 + +1.4 789,943 - +1.6 789,943 - -0.4 789,952 + +4.2 789,953 - -0.1 790,021 - -0.3 790,021 - -0.0 790,151 + ABIE40_RS30525 0.16 -0.2 790,151 + ABIE40_RS30525 0.16 +1.5 790,152 - ABIE40_RS30525 0.16 -0.0 790,183 + ABIE40_RS30525 0.22 +1.1 790,184 - ABIE40_RS30525 0.22 +2.0 790,237 + ABIE40_RS30525 0.33 -0.6 790,238 - ABIE40_RS30525 0.34 -2.4 790,486 - ABIE40_RS30525 0.85 +1.3 790,486 - ABIE40_RS30525 0.85 -0.4 790,567 + -0.1 790,837 + ABIE40_RS30530 0.39 -1.9
Or see this region's nucleotide sequence