Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30505 and ABIE40_RS30510 are separated by 142 nucleotides ABIE40_RS30510 and ABIE40_RS30515 are separated by 121 nucleotides
ABIE40_RS30505: ABIE40_RS30505 - NAD(P)/FAD-dependent oxidoreductase, at 784,768 to 785,955
_RS30505
ABIE40_RS30510: ABIE40_RS30510 - CBS domain-containing protein, at 786,098 to 786,514
_RS30510
ABIE40_RS30515: ABIE40_RS30515 - glycogen debranching protein GlgX, at 786,636 to 788,720
_RS30515
Position (kb) 786
787 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 785.147 kb on + strand, within ABIE40_RS30505 at 785.147 kb on + strand, within ABIE40_RS30505 at 785.147 kb on + strand, within ABIE40_RS30505 at 785.147 kb on + strand, within ABIE40_RS30505 at 785.148 kb on - strand, within ABIE40_RS30505 at 785.148 kb on - strand, within ABIE40_RS30505 at 785.148 kb on - strand, within ABIE40_RS30505 at 785.148 kb on - strand, within ABIE40_RS30505 at 785.334 kb on + strand, within ABIE40_RS30505 at 785.359 kb on - strand, within ABIE40_RS30505 at 785.727 kb on + strand, within ABIE40_RS30505 at 785.727 kb on + strand, within ABIE40_RS30505 at 785.728 kb on - strand, within ABIE40_RS30505 at 785.845 kb on + strand at 785.845 kb on + strand at 785.845 kb on + strand at 785.846 kb on - strand at 785.965 kb on - strand at 786.436 kb on + strand, within ABIE40_RS30510 at 786.437 kb on - strand, within ABIE40_RS30510 at 786.506 kb on + strand at 786.506 kb on + strand at 786.507 kb on - strand at 786.574 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.637 kb on + strand at 786.638 kb on - strand at 786.682 kb on + strand at 786.682 kb on + strand at 786.682 kb on + strand at 786.683 kb on - strand at 786.764 kb on + strand at 786.765 kb on - strand at 786.765 kb on - strand at 786.784 kb on - strand at 787.197 kb on + strand, within ABIE40_RS30515 at 787.198 kb on - strand, within ABIE40_RS30515 at 787.240 kb on + strand, within ABIE40_RS30515 at 787.240 kb on + strand, within ABIE40_RS30515 at 787.240 kb on + strand, within ABIE40_RS30515 at 787.240 kb on + strand, within ABIE40_RS30515 at 787.241 kb on - strand, within ABIE40_RS30515 at 787.274 kb on + strand, within ABIE40_RS30515 at 787.275 kb on - strand, within ABIE40_RS30515 at 787.275 kb on - strand, within ABIE40_RS30515 at 787.317 kb on + strand, within ABIE40_RS30515 at 787.317 kb on + strand, within ABIE40_RS30515 at 787.318 kb on - strand, within ABIE40_RS30515 at 787.318 kb on - strand, within ABIE40_RS30515 at 787.396 kb on + strand, within ABIE40_RS30515 at 787.397 kb on - strand, within ABIE40_RS30515 at 787.397 kb on - strand, within ABIE40_RS30515 at 787.451 kb on + strand, within ABIE40_RS30515 at 787.483 kb on + strand, within ABIE40_RS30515 at 787.483 kb on + strand, within ABIE40_RS30515 at 787.483 kb on + strand, within ABIE40_RS30515 at 787.483 kb on + strand, within ABIE40_RS30515 at 787.484 kb on - strand, within ABIE40_RS30515 at 787.484 kb on - strand, within ABIE40_RS30515
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 785,147 + ABIE40_RS30505 0.32 +4.6 785,147 + ABIE40_RS30505 0.32 -0.3 785,147 + ABIE40_RS30505 0.32 +0.3 785,147 + ABIE40_RS30505 0.32 -0.3 785,148 - ABIE40_RS30505 0.32 -2.2 785,148 - ABIE40_RS30505 0.32 +0.2 785,148 - ABIE40_RS30505 0.32 +1.0 785,148 - ABIE40_RS30505 0.32 -0.6 785,334 + ABIE40_RS30505 0.48 -0.3 785,359 - ABIE40_RS30505 0.50 +2.7 785,727 + ABIE40_RS30505 0.81 -1.4 785,727 + ABIE40_RS30505 0.81 +0.9 785,728 - ABIE40_RS30505 0.81 -1.4 785,845 + -3.6 785,845 + -0.8 785,845 + -1.6 785,846 - +1.1 785,965 - +0.4 786,436 + ABIE40_RS30510 0.81 -3.5 786,437 - ABIE40_RS30510 0.81 -0.6 786,506 + -3.4 786,506 + +2.3 786,507 - -2.3 786,574 + -0.7 786,576 + +1.4 786,576 + -0.3 786,637 + +1.5 786,638 - -0.4 786,682 + +3.0 786,682 + -0.8 786,682 + -0.7 786,683 - -0.7 786,764 + -4.7 786,765 - +1.3 786,765 - +2.3 786,784 - +0.6 787,197 + ABIE40_RS30515 0.27 -0.3 787,198 - ABIE40_RS30515 0.27 -1.0 787,240 + ABIE40_RS30515 0.29 -2.0 787,240 + ABIE40_RS30515 0.29 +2.2 787,240 + ABIE40_RS30515 0.29 -2.5 787,240 + ABIE40_RS30515 0.29 +0.7 787,241 - ABIE40_RS30515 0.29 +0.1 787,274 + ABIE40_RS30515 0.31 -1.3 787,275 - ABIE40_RS30515 0.31 +0.4 787,275 - ABIE40_RS30515 0.31 -1.2 787,317 + ABIE40_RS30515 0.33 -0.2 787,317 + ABIE40_RS30515 0.33 -0.1 787,318 - ABIE40_RS30515 0.33 -2.8 787,318 - ABIE40_RS30515 0.33 +0.3 787,396 + ABIE40_RS30515 0.36 -0.1 787,397 - ABIE40_RS30515 0.36 -0.3 787,397 - ABIE40_RS30515 0.36 +1.2 787,451 + ABIE40_RS30515 0.39 +0.6 787,483 + ABIE40_RS30515 0.41 +1.2 787,483 + ABIE40_RS30515 0.41 +0.9 787,483 + ABIE40_RS30515 0.41 -1.3 787,483 + ABIE40_RS30515 0.41 -3.0 787,484 - ABIE40_RS30515 0.41 +0.3 787,484 - ABIE40_RS30515 0.41 -0.0
Or see this region's nucleotide sequence