Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30365 and ABIE40_RS30370 are separated by 164 nucleotides ABIE40_RS30370 and ABIE40_RS30375 are separated by 34 nucleotides ABIE40_RS30375 and ABIE40_RS30380 are separated by 19 nucleotides ABIE40_RS30380 and ABIE40_RS30385 are separated by 233 nucleotides
ABIE40_RS30365: ABIE40_RS30365 - PRC-barrel domain-containing protein, at 762,121 to 762,564
_RS30365
ABIE40_RS30370: ABIE40_RS30370 - hypothetical protein, at 762,729 to 763,061
_RS30370
ABIE40_RS30375: ABIE40_RS30375 - arsenic transporter, at 763,096 to 764,343
_RS30375
ABIE40_RS30380: ABIE40_RS30380 - efflux RND transporter permease subunit, at 764,363 to 764,554
_RS30380
ABIE40_RS30385: ABIE40_RS30385 - hypothetical protein, at 764,788 to 765,147
_RS30385
Position (kb) 763
764
765 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 762.097 kb on + strand at 762.140 kb on + strand at 762.159 kb on + strand at 762.160 kb on - strand at 762.160 kb on - strand at 762.248 kb on + strand, within ABIE40_RS30365 at 762.249 kb on - strand, within ABIE40_RS30365 at 762.249 kb on - strand, within ABIE40_RS30365 at 762.249 kb on - strand, within ABIE40_RS30365 at 762.362 kb on + strand, within ABIE40_RS30365 at 762.363 kb on - strand, within ABIE40_RS30365 at 762.363 kb on - strand, within ABIE40_RS30365 at 762.363 kb on - strand, within ABIE40_RS30365 at 762.391 kb on + strand, within ABIE40_RS30365 at 762.456 kb on + strand, within ABIE40_RS30365 at 762.457 kb on - strand, within ABIE40_RS30365 at 762.457 kb on - strand, within ABIE40_RS30365 at 762.555 kb on + strand at 762.556 kb on - strand at 762.556 kb on - strand at 762.556 kb on - strand at 762.610 kb on + strand at 762.673 kb on - strand at 762.725 kb on + strand at 762.726 kb on - strand at 762.726 kb on - strand at 762.726 kb on - strand at 762.963 kb on + strand, within ABIE40_RS30370 at 762.963 kb on + strand, within ABIE40_RS30370 at 762.964 kb on - strand, within ABIE40_RS30370 at 762.964 kb on - strand, within ABIE40_RS30370 at 762.964 kb on - strand, within ABIE40_RS30370 at 762.964 kb on - strand, within ABIE40_RS30370 at 762.980 kb on + strand, within ABIE40_RS30370 at 762.980 kb on + strand, within ABIE40_RS30370 at 762.980 kb on + strand, within ABIE40_RS30370 at 763.153 kb on + strand at 763.154 kb on - strand at 763.161 kb on + strand at 763.164 kb on - strand at 763.207 kb on + strand at 763.207 kb on + strand at 763.207 kb on + strand at 763.207 kb on + strand at 763.207 kb on + strand at 763.207 kb on + strand at 763.207 kb on + strand at 763.207 kb on + strand at 763.208 kb on - strand at 763.208 kb on - strand at 763.208 kb on - strand at 763.208 kb on - strand at 763.208 kb on - strand at 763.210 kb on + strand at 763.210 kb on + strand at 763.210 kb on + strand at 763.210 kb on + strand at 763.210 kb on + strand at 763.211 kb on - strand at 763.211 kb on - strand at 763.211 kb on - strand at 763.211 kb on - strand at 763.211 kb on - strand at 763.464 kb on + strand, within ABIE40_RS30375 at 763.472 kb on - strand, within ABIE40_RS30375 at 763.472 kb on - strand, within ABIE40_RS30375 at 763.503 kb on + strand, within ABIE40_RS30375 at 763.503 kb on + strand, within ABIE40_RS30375 at 763.504 kb on - strand, within ABIE40_RS30375 at 763.504 kb on - strand, within ABIE40_RS30375 at 763.504 kb on - strand, within ABIE40_RS30375 at 763.504 kb on - strand, within ABIE40_RS30375 at 763.504 kb on - strand, within ABIE40_RS30375 at 763.558 kb on - strand, within ABIE40_RS30375 at 763.558 kb on - strand, within ABIE40_RS30375 at 763.558 kb on - strand, within ABIE40_RS30375 at 763.690 kb on + strand, within ABIE40_RS30375 at 763.754 kb on + strand, within ABIE40_RS30375 at 763.755 kb on - strand, within ABIE40_RS30375 at 763.755 kb on - strand, within ABIE40_RS30375 at 763.771 kb on + strand, within ABIE40_RS30375 at 763.926 kb on - strand, within ABIE40_RS30375 at 764.020 kb on + strand, within ABIE40_RS30375 at 764.021 kb on - strand, within ABIE40_RS30375 at 764.039 kb on + strand, within ABIE40_RS30375 at 764.039 kb on + strand, within ABIE40_RS30375 at 764.166 kb on - strand, within ABIE40_RS30375 at 764.320 kb on - strand at 764.344 kb on - strand at 764.344 kb on - strand at 764.359 kb on + strand at 764.360 kb on - strand at 764.417 kb on + strand, within ABIE40_RS30380 at 764.417 kb on + strand, within ABIE40_RS30380 at 764.417 kb on + strand, within ABIE40_RS30380 at 764.418 kb on - strand, within ABIE40_RS30380 at 764.436 kb on + strand, within ABIE40_RS30380 at 764.436 kb on + strand, within ABIE40_RS30380 at 764.454 kb on + strand, within ABIE40_RS30380 at 764.454 kb on + strand, within ABIE40_RS30380 at 764.650 kb on + strand at 764.650 kb on + strand at 764.650 kb on + strand at 764.750 kb on + strand at 764.750 kb on + strand at 764.751 kb on - strand at 764.751 kb on - strand at 764.777 kb on + strand at 764.777 kb on + strand at 764.778 kb on - strand at 764.891 kb on + strand, within ABIE40_RS30385 at 764.892 kb on - strand, within ABIE40_RS30385 at 764.892 kb on - strand, within ABIE40_RS30385 at 764.892 kb on - strand, within ABIE40_RS30385 at 764.896 kb on - strand, within ABIE40_RS30385 at 765.035 kb on + strand, within ABIE40_RS30385 at 765.036 kb on - strand, within ABIE40_RS30385 at 765.037 kb on + strand, within ABIE40_RS30385 at 765.037 kb on + strand, within ABIE40_RS30385 at 765.038 kb on - strand, within ABIE40_RS30385 at 765.038 kb on - strand, within ABIE40_RS30385 at 765.212 kb on - strand at 765.271 kb on - strand at 765.322 kb on - strand at 765.323 kb on + strand at 765.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 762,097 + +2.5 762,140 + -1.7 762,159 + +0.2 762,160 - -1.4 762,160 - +0.8 762,248 + ABIE40_RS30365 0.29 +0.6 762,249 - ABIE40_RS30365 0.29 +4.5 762,249 - ABIE40_RS30365 0.29 -0.4 762,249 - ABIE40_RS30365 0.29 -2.3 762,362 + ABIE40_RS30365 0.54 -3.4 762,363 - ABIE40_RS30365 0.55 +2.0 762,363 - ABIE40_RS30365 0.55 +2.7 762,363 - ABIE40_RS30365 0.55 +2.6 762,391 + ABIE40_RS30365 0.61 +2.4 762,456 + ABIE40_RS30365 0.75 -1.3 762,457 - ABIE40_RS30365 0.76 +0.9 762,457 - ABIE40_RS30365 0.76 +0.9 762,555 + -2.6 762,556 - +0.4 762,556 - -2.0 762,556 - -3.7 762,610 + -0.8 762,673 - +0.5 762,725 + +0.2 762,726 - +0.9 762,726 - +0.8 762,726 - -0.6 762,963 + ABIE40_RS30370 0.70 -2.6 762,963 + ABIE40_RS30370 0.70 +0.9 762,964 - ABIE40_RS30370 0.71 +0.3 762,964 - ABIE40_RS30370 0.71 -0.6 762,964 - ABIE40_RS30370 0.71 -1.9 762,964 - ABIE40_RS30370 0.71 -0.4 762,980 + ABIE40_RS30370 0.75 +1.1 762,980 + ABIE40_RS30370 0.75 -2.4 762,980 + ABIE40_RS30370 0.75 +0.2 763,153 + -0.1 763,154 - +0.7 763,161 + +0.5 763,164 - -0.5 763,207 + -3.4 763,207 + +0.2 763,207 + +0.2 763,207 + -1.2 763,207 + -0.4 763,207 + +0.2 763,207 + +0.9 763,207 + -0.1 763,208 - +0.1 763,208 - -1.0 763,208 - +0.7 763,208 - -3.2 763,208 - -2.3 763,210 + +2.5 763,210 + -0.8 763,210 + -0.2 763,210 + -0.0 763,210 + +0.2 763,211 - +0.7 763,211 - -1.5 763,211 - -0.1 763,211 - -1.6 763,211 - +1.3 763,464 + ABIE40_RS30375 0.29 +1.7 763,472 - ABIE40_RS30375 0.30 -3.5 763,472 - ABIE40_RS30375 0.30 +0.7 763,503 + ABIE40_RS30375 0.33 +0.5 763,503 + ABIE40_RS30375 0.33 +0.5 763,504 - ABIE40_RS30375 0.33 +1.4 763,504 - ABIE40_RS30375 0.33 -0.1 763,504 - ABIE40_RS30375 0.33 +1.7 763,504 - ABIE40_RS30375 0.33 -2.2 763,504 - ABIE40_RS30375 0.33 +0.3 763,558 - ABIE40_RS30375 0.37 -1.2 763,558 - ABIE40_RS30375 0.37 -2.6 763,558 - ABIE40_RS30375 0.37 -2.7 763,690 + ABIE40_RS30375 0.48 -1.3 763,754 + ABIE40_RS30375 0.53 -1.0 763,755 - ABIE40_RS30375 0.53 +1.1 763,755 - ABIE40_RS30375 0.53 +0.7 763,771 + ABIE40_RS30375 0.54 -1.9 763,926 - ABIE40_RS30375 0.67 -0.4 764,020 + ABIE40_RS30375 0.74 +0.2 764,021 - ABIE40_RS30375 0.74 +1.4 764,039 + ABIE40_RS30375 0.76 +0.8 764,039 + ABIE40_RS30375 0.76 -2.1 764,166 - ABIE40_RS30375 0.86 +0.8 764,320 - -1.7 764,344 - -0.7 764,344 - +1.3 764,359 + -1.7 764,360 - +0.7 764,417 + ABIE40_RS30380 0.28 -0.1 764,417 + ABIE40_RS30380 0.28 +0.6 764,417 + ABIE40_RS30380 0.28 -2.4 764,418 - ABIE40_RS30380 0.29 -0.6 764,436 + ABIE40_RS30380 0.38 +1.4 764,436 + ABIE40_RS30380 0.38 +1.3 764,454 + ABIE40_RS30380 0.47 -3.1 764,454 + ABIE40_RS30380 0.47 +0.4 764,650 + +1.6 764,650 + -0.7 764,650 + -3.5 764,750 + -1.7 764,750 + -0.8 764,751 - +0.8 764,751 - -2.0 764,777 + -4.2 764,777 + +0.5 764,778 - -0.8 764,891 + ABIE40_RS30385 0.29 +0.5 764,892 - ABIE40_RS30385 0.29 -0.5 764,892 - ABIE40_RS30385 0.29 +0.4 764,892 - ABIE40_RS30385 0.29 -2.0 764,896 - ABIE40_RS30385 0.30 +0.8 765,035 + ABIE40_RS30385 0.69 -0.9 765,036 - ABIE40_RS30385 0.69 -1.7 765,037 + ABIE40_RS30385 0.69 -1.1 765,037 + ABIE40_RS30385 0.69 +1.2 765,038 - ABIE40_RS30385 0.69 -3.2 765,038 - ABIE40_RS30385 0.69 -1.6 765,212 - -2.7 765,271 - +0.7 765,322 - -4.1 765,323 + -1.2 765,324 - -1.1
Or see this region's nucleotide sequence