Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30000 and ABIE40_RS30005 overlap by 4 nucleotides ABIE40_RS30005 and ABIE40_RS30010 overlap by 4 nucleotides ABIE40_RS30010 and ABIE40_RS30015 overlap by 4 nucleotides ABIE40_RS30015 and ABIE40_RS30020 are separated by 64 nucleotides
ABIE40_RS30000: ABIE40_RS30000 - branched-chain amino acid ABC transporter permease, at 690,936 to 691,907
_RS30000
ABIE40_RS30005: ABIE40_RS30005 - branched-chain amino acid ABC transporter permease, at 691,904 to 692,815
_RS30005
ABIE40_RS30010: ABIE40_RS30010 - ABC transporter ATP-binding protein, at 692,812 to 693,552
_RS30010
ABIE40_RS30015: ABIE40_RS30015 - ABC transporter ATP-binding protein, at 693,549 to 694,325
_RS30015
ABIE40_RS30020: ABIE40_RS30020 - GntR family transcriptional regulator, at 694,390 to 695,229
_RS30020
Position (kb) 692
693
694 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 691.852 kb on + strand at 691.852 kb on + strand at 691.852 kb on + strand at 691.852 kb on + strand at 691.852 kb on + strand at 691.852 kb on + strand at 691.853 kb on - strand at 691.853 kb on - strand at 691.853 kb on - strand at 691.885 kb on + strand at 691.885 kb on + strand at 691.885 kb on + strand at 691.886 kb on - strand at 691.922 kb on + strand at 691.923 kb on - strand at 692.121 kb on + strand, within ABIE40_RS30005 at 692.122 kb on - strand, within ABIE40_RS30005 at 692.122 kb on - strand, within ABIE40_RS30005 at 692.406 kb on + strand, within ABIE40_RS30005 at 692.407 kb on - strand, within ABIE40_RS30005 at 692.407 kb on - strand, within ABIE40_RS30005 at 692.407 kb on - strand, within ABIE40_RS30005 at 692.410 kb on - strand, within ABIE40_RS30005 at 692.533 kb on + strand, within ABIE40_RS30005 at 692.534 kb on - strand, within ABIE40_RS30005 at 692.736 kb on + strand at 692.737 kb on - strand at 692.737 kb on - strand at 692.883 kb on + strand at 692.884 kb on - strand at 692.884 kb on - strand at 692.884 kb on - strand at 693.188 kb on + strand, within ABIE40_RS30010 at 693.189 kb on - strand, within ABIE40_RS30010 at 693.189 kb on - strand, within ABIE40_RS30010 at 693.189 kb on - strand, within ABIE40_RS30010 at 693.189 kb on - strand, within ABIE40_RS30010 at 693.199 kb on + strand, within ABIE40_RS30010 at 693.569 kb on - strand at 693.674 kb on + strand, within ABIE40_RS30015 at 693.674 kb on + strand, within ABIE40_RS30015 at 693.674 kb on + strand, within ABIE40_RS30015 at 693.675 kb on - strand, within ABIE40_RS30015 at 693.680 kb on + strand, within ABIE40_RS30015 at 693.680 kb on + strand, within ABIE40_RS30015 at 693.681 kb on - strand, within ABIE40_RS30015 at 693.681 kb on - strand, within ABIE40_RS30015 at 693.681 kb on - strand, within ABIE40_RS30015 at 693.681 kb on - strand, within ABIE40_RS30015 at 694.209 kb on - strand, within ABIE40_RS30015 at 694.209 kb on - strand, within ABIE40_RS30015 at 694.365 kb on - strand at 694.411 kb on + strand at 694.412 kb on - strand at 694.463 kb on + strand at 694.463 kb on + strand at 694.463 kb on + strand at 694.463 kb on + strand at 694.464 kb on - strand at 694.464 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 691,852 + -1.3 691,852 + -2.2 691,852 + -2.2 691,852 + -2.6 691,852 + -1.6 691,852 + +1.4 691,853 - +0.9 691,853 - +2.1 691,853 - +2.6 691,885 + -0.5 691,885 + -0.9 691,885 + -0.6 691,886 - +1.2 691,922 + +0.5 691,923 - -0.0 692,121 + ABIE40_RS30005 0.24 -2.9 692,122 - ABIE40_RS30005 0.24 -2.1 692,122 - ABIE40_RS30005 0.24 +1.2 692,406 + ABIE40_RS30005 0.55 -0.5 692,407 - ABIE40_RS30005 0.55 +0.2 692,407 - ABIE40_RS30005 0.55 +0.6 692,407 - ABIE40_RS30005 0.55 +1.1 692,410 - ABIE40_RS30005 0.55 +2.0 692,533 + ABIE40_RS30005 0.69 -0.8 692,534 - ABIE40_RS30005 0.69 +1.3 692,736 + +0.6 692,737 - +0.3 692,737 - +1.3 692,883 + -1.0 692,884 - +0.9 692,884 - -1.0 692,884 - -3.4 693,188 + ABIE40_RS30010 0.51 -1.3 693,189 - ABIE40_RS30010 0.51 -3.3 693,189 - ABIE40_RS30010 0.51 -1.4 693,189 - ABIE40_RS30010 0.51 -1.4 693,189 - ABIE40_RS30010 0.51 -4.5 693,199 + ABIE40_RS30010 0.52 -1.3 693,569 - -0.5 693,674 + ABIE40_RS30015 0.16 -2.3 693,674 + ABIE40_RS30015 0.16 +0.3 693,674 + ABIE40_RS30015 0.16 +0.4 693,675 - ABIE40_RS30015 0.16 -1.7 693,680 + ABIE40_RS30015 0.17 -1.3 693,680 + ABIE40_RS30015 0.17 -3.9 693,681 - ABIE40_RS30015 0.17 +0.2 693,681 - ABIE40_RS30015 0.17 +0.6 693,681 - ABIE40_RS30015 0.17 -0.0 693,681 - ABIE40_RS30015 0.17 +1.2 694,209 - ABIE40_RS30015 0.85 -0.1 694,209 - ABIE40_RS30015 0.85 -0.7 694,365 - -1.0 694,411 + -2.0 694,412 - -1.9 694,463 + -3.4 694,463 + +1.0 694,463 + -0.6 694,463 + -0.5 694,464 - -3.4 694,464 - -2.4
Or see this region's nucleotide sequence