Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29775 and ABIE40_RS29780 are separated by 648 nucleotides ABIE40_RS29780 and ABIE40_RS29785 are separated by 905 nucleotides
ABIE40_RS29775: ABIE40_RS29775 - transposase, at 646,881 to 647,698
_RS29775
ABIE40_RS29780: ABIE40_RS29780 - hypothetical protein, at 648,347 to 648,613
_RS29780
ABIE40_RS29785: ABIE40_RS29785 - hypothetical protein, at 649,519 to 649,878
_RS29785
Position (kb) 648
649 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 647.555 kb on + strand, within ABIE40_RS29775 at 647.624 kb on + strand at 647.624 kb on + strand at 647.624 kb on + strand at 647.625 kb on - strand at 647.625 kb on - strand at 647.625 kb on - strand at 647.662 kb on - strand at 647.690 kb on + strand at 647.721 kb on + strand at 647.726 kb on - strand at 647.737 kb on - strand at 647.824 kb on - strand at 647.824 kb on - strand at 647.922 kb on - strand at 647.952 kb on + strand at 647.989 kb on + strand at 647.996 kb on + strand at 647.997 kb on - strand at 648.048 kb on + strand at 648.048 kb on + strand at 648.049 kb on - strand at 648.055 kb on + strand at 648.055 kb on + strand at 648.055 kb on + strand at 648.056 kb on - strand at 648.058 kb on + strand at 648.059 kb on - strand at 648.059 kb on - strand at 648.059 kb on - strand at 648.059 kb on - strand at 648.059 kb on - strand at 648.086 kb on + strand at 648.106 kb on - strand at 648.244 kb on + strand at 648.245 kb on - strand at 648.245 kb on - strand at 648.249 kb on + strand at 648.250 kb on - strand at 648.250 kb on - strand at 648.250 kb on - strand at 648.346 kb on + strand at 648.346 kb on + strand at 648.346 kb on + strand at 648.347 kb on - strand at 648.347 kb on - strand at 648.447 kb on + strand, within ABIE40_RS29780 at 648.513 kb on + strand, within ABIE40_RS29780 at 648.513 kb on + strand, within ABIE40_RS29780 at 648.611 kb on + strand at 648.631 kb on + strand at 648.631 kb on + strand at 648.636 kb on + strand at 648.636 kb on + strand at 648.746 kb on + strand at 648.916 kb on + strand at 648.916 kb on + strand at 648.917 kb on - strand at 648.917 kb on - strand at 648.917 kb on - strand at 648.917 kb on - strand at 649.086 kb on + strand at 649.146 kb on - strand at 649.146 kb on - strand at 649.242 kb on + strand at 649.243 kb on - strand at 649.320 kb on + strand at 649.336 kb on + strand at 649.415 kb on + strand at 649.415 kb on + strand at 649.416 kb on - strand at 649.484 kb on + strand at 649.489 kb on + strand at 649.522 kb on + strand at 649.523 kb on - strand at 649.605 kb on - strand, within ABIE40_RS29785
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 647,555 + ABIE40_RS29775 0.82 -0.7 647,624 + -0.4 647,624 + +1.2 647,624 + -1.7 647,625 - -2.9 647,625 - +1.7 647,625 - +0.6 647,662 - +0.4 647,690 + -2.2 647,721 + -0.7 647,726 - +0.2 647,737 - +2.1 647,824 - -1.9 647,824 - +0.3 647,922 - +2.9 647,952 + +2.0 647,989 + -0.4 647,996 + +0.8 647,997 - +0.8 648,048 + -1.4 648,048 + -2.5 648,049 - +2.4 648,055 + -0.7 648,055 + -0.0 648,055 + +0.9 648,056 - +0.2 648,058 + -0.7 648,059 - -2.6 648,059 - -2.3 648,059 - -2.2 648,059 - +0.3 648,059 - -0.9 648,086 + -1.4 648,106 - -0.3 648,244 + +1.3 648,245 - +0.1 648,245 - -0.2 648,249 + -0.5 648,250 - -1.4 648,250 - -2.4 648,250 - -0.8 648,346 + -1.3 648,346 + -2.9 648,346 + -1.3 648,347 - -2.0 648,347 - -3.3 648,447 + ABIE40_RS29780 0.37 -3.1 648,513 + ABIE40_RS29780 0.62 -2.0 648,513 + ABIE40_RS29780 0.62 +1.2 648,611 + +1.0 648,631 + +0.4 648,631 + +0.1 648,636 + +0.0 648,636 + -1.0 648,746 + -0.5 648,916 + +0.4 648,916 + +0.9 648,917 - -1.8 648,917 - +0.5 648,917 - -2.9 648,917 - +1.6 649,086 + -0.5 649,146 - -1.4 649,146 - -2.6 649,242 + +0.2 649,243 - +1.1 649,320 + -0.0 649,336 + -0.7 649,415 + -2.0 649,415 + -2.3 649,416 - +0.9 649,484 + +0.1 649,489 + -4.4 649,522 + -4.1 649,523 - +0.3 649,605 - ABIE40_RS29785 0.24 -1.3
Or see this region's nucleotide sequence