Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS29550

Experiment: Thymidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS29545 and ABIE40_RS29550 are separated by 0 nucleotidesABIE40_RS29550 and ABIE40_RS29555 are separated by 111 nucleotidesABIE40_RS29555 and ABIE40_RS29560 are separated by 34 nucleotides ABIE40_RS29545: ABIE40_RS29545 - GAF domain-containing protein, at 602,169 to 603,446 _RS29545 ABIE40_RS29550: ABIE40_RS29550 - response regulator transcription factor, at 603,447 to 604,187 _RS29550 ABIE40_RS29555: ABIE40_RS29555 - 4-oxalocrotonate tautomerase family protein, at 604,299 to 604,514 _RS29555 ABIE40_RS29560: ABIE40_RS29560 - SMP-30/gluconolactonase/LRE family protein, at 604,549 to 605,379 _RS29560 Position (kb) 603 604 605Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 602.610 kb on + strand, within ABIE40_RS29545at 602.610 kb on + strand, within ABIE40_RS29545at 602.664 kb on + strand, within ABIE40_RS29545at 602.664 kb on + strand, within ABIE40_RS29545at 602.664 kb on + strand, within ABIE40_RS29545at 602.664 kb on + strand, within ABIE40_RS29545at 602.665 kb on - strand, within ABIE40_RS29545at 602.665 kb on - strand, within ABIE40_RS29545at 602.665 kb on - strand, within ABIE40_RS29545at 602.665 kb on - strand, within ABIE40_RS29545at 602.665 kb on - strand, within ABIE40_RS29545at 602.665 kb on - strand, within ABIE40_RS29545at 602.666 kb on + strand, within ABIE40_RS29545at 602.747 kb on - strand, within ABIE40_RS29545at 603.069 kb on - strand, within ABIE40_RS29545at 603.069 kb on - strand, within ABIE40_RS29545at 603.118 kb on + strand, within ABIE40_RS29545at 603.118 kb on + strand, within ABIE40_RS29545at 603.119 kb on - strand, within ABIE40_RS29545at 603.119 kb on - strand, within ABIE40_RS29545at 603.120 kb on + strand, within ABIE40_RS29545at 603.120 kb on + strand, within ABIE40_RS29545at 603.120 kb on + strand, within ABIE40_RS29545at 603.120 kb on + strand, within ABIE40_RS29545at 603.120 kb on + strand, within ABIE40_RS29545at 603.120 kb on + strand, within ABIE40_RS29545at 603.120 kb on + strand, within ABIE40_RS29545at 603.120 kb on + strand, within ABIE40_RS29545at 603.121 kb on - strand, within ABIE40_RS29545at 603.121 kb on - strand, within ABIE40_RS29545at 603.121 kb on - strand, within ABIE40_RS29545at 603.125 kb on + strand, within ABIE40_RS29545at 603.126 kb on - strand, within ABIE40_RS29545at 603.342 kb on - strandat 603.444 kb on + strandat 603.444 kb on + strandat 603.478 kb on + strandat 603.479 kb on - strandat 603.500 kb on + strandat 603.500 kb on + strandat 603.501 kb on - strandat 603.594 kb on + strand, within ABIE40_RS29550at 603.594 kb on + strand, within ABIE40_RS29550at 603.595 kb on - strand, within ABIE40_RS29550at 603.677 kb on + strand, within ABIE40_RS29550at 603.677 kb on + strand, within ABIE40_RS29550at 603.677 kb on + strand, within ABIE40_RS29550at 603.711 kb on + strand, within ABIE40_RS29550at 603.712 kb on - strand, within ABIE40_RS29550at 603.712 kb on - strand, within ABIE40_RS29550at 603.753 kb on + strand, within ABIE40_RS29550at 603.754 kb on - strand, within ABIE40_RS29550at 603.759 kb on + strand, within ABIE40_RS29550at 603.759 kb on + strand, within ABIE40_RS29550at 603.760 kb on - strand, within ABIE40_RS29550at 603.760 kb on - strand, within ABIE40_RS29550at 603.903 kb on + strand, within ABIE40_RS29550at 603.903 kb on + strand, within ABIE40_RS29550at 603.904 kb on - strand, within ABIE40_RS29550at 603.904 kb on - strand, within ABIE40_RS29550at 603.972 kb on - strand, within ABIE40_RS29550at 604.006 kb on - strand, within ABIE40_RS29550at 604.109 kb on + strand, within ABIE40_RS29550at 604.109 kb on + strand, within ABIE40_RS29550at 604.109 kb on + strand, within ABIE40_RS29550at 604.206 kb on - strandat 604.206 kb on - strandat 604.206 kb on - strandat 604.233 kb on + strandat 604.259 kb on + strandat 604.260 kb on - strandat 604.277 kb on - strandat 604.299 kb on - strandat 604.313 kb on + strandat 604.453 kb on - strand, within ABIE40_RS29555at 604.453 kb on - strand, within ABIE40_RS29555at 604.494 kb on + strandat 604.494 kb on + strandat 604.494 kb on + strandat 604.495 kb on - strandat 604.648 kb on + strand, within ABIE40_RS29560at 604.648 kb on + strand, within ABIE40_RS29560at 604.648 kb on + strand, within ABIE40_RS29560at 604.648 kb on + strand, within ABIE40_RS29560at 604.648 kb on + strand, within ABIE40_RS29560at 604.649 kb on - strand, within ABIE40_RS29560at 604.651 kb on - strand, within ABIE40_RS29560at 604.713 kb on + strand, within ABIE40_RS29560at 604.714 kb on - strand, within ABIE40_RS29560at 604.813 kb on + strand, within ABIE40_RS29560at 604.873 kb on + strand, within ABIE40_RS29560at 604.873 kb on + strand, within ABIE40_RS29560at 604.873 kb on + strand, within ABIE40_RS29560at 604.874 kb on - strand, within ABIE40_RS29560at 604.989 kb on + strand, within ABIE40_RS29560at 605.073 kb on + strand, within ABIE40_RS29560at 605.074 kb on - strand, within ABIE40_RS29560at 605.178 kb on + strand, within ABIE40_RS29560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
remove
602,610 + ABIE40_RS29545 0.35 +1.3
602,610 + ABIE40_RS29545 0.35 +0.3
602,664 + ABIE40_RS29545 0.39 -2.1
602,664 + ABIE40_RS29545 0.39 -0.1
602,664 + ABIE40_RS29545 0.39 +2.8
602,664 + ABIE40_RS29545 0.39 -0.8
602,665 - ABIE40_RS29545 0.39 +2.8
602,665 - ABIE40_RS29545 0.39 -3.0
602,665 - ABIE40_RS29545 0.39 -1.4
602,665 - ABIE40_RS29545 0.39 -0.0
602,665 - ABIE40_RS29545 0.39 -3.3
602,665 - ABIE40_RS29545 0.39 +2.7
602,666 + ABIE40_RS29545 0.39 +0.2
602,747 - ABIE40_RS29545 0.45 +1.2
603,069 - ABIE40_RS29545 0.70 -0.6
603,069 - ABIE40_RS29545 0.70 +0.4
603,118 + ABIE40_RS29545 0.74 +3.9
603,118 + ABIE40_RS29545 0.74 -1.5
603,119 - ABIE40_RS29545 0.74 -0.7
603,119 - ABIE40_RS29545 0.74 -0.4
603,120 + ABIE40_RS29545 0.74 +2.3
603,120 + ABIE40_RS29545 0.74 -2.1
603,120 + ABIE40_RS29545 0.74 -0.2
603,120 + ABIE40_RS29545 0.74 -0.1
603,120 + ABIE40_RS29545 0.74 -0.7
603,120 + ABIE40_RS29545 0.74 -1.0
603,120 + ABIE40_RS29545 0.74 -3.6
603,120 + ABIE40_RS29545 0.74 +2.2
603,121 - ABIE40_RS29545 0.74 -3.7
603,121 - ABIE40_RS29545 0.74 +1.1
603,121 - ABIE40_RS29545 0.74 -2.1
603,125 + ABIE40_RS29545 0.75 -1.5
603,126 - ABIE40_RS29545 0.75 -0.5
603,342 - -0.7
603,444 + -0.2
603,444 + +1.2
603,478 + +2.1
603,479 - +1.7
603,500 + -4.3
603,500 + +0.5
603,501 - +2.2
603,594 + ABIE40_RS29550 0.20 -1.9
603,594 + ABIE40_RS29550 0.20 -1.2
603,595 - ABIE40_RS29550 0.20 -1.0
603,677 + ABIE40_RS29550 0.31 -1.4
603,677 + ABIE40_RS29550 0.31 -0.8
603,677 + ABIE40_RS29550 0.31 -1.8
603,711 + ABIE40_RS29550 0.36 +0.2
603,712 - ABIE40_RS29550 0.36 -2.6
603,712 - ABIE40_RS29550 0.36 +0.2
603,753 + ABIE40_RS29550 0.41 -0.6
603,754 - ABIE40_RS29550 0.41 -2.0
603,759 + ABIE40_RS29550 0.42 -0.8
603,759 + ABIE40_RS29550 0.42 +3.0
603,760 - ABIE40_RS29550 0.42 -2.3
603,760 - ABIE40_RS29550 0.42 +0.2
603,903 + ABIE40_RS29550 0.62 +0.7
603,903 + ABIE40_RS29550 0.62 +0.0
603,904 - ABIE40_RS29550 0.62 +0.2
603,904 - ABIE40_RS29550 0.62 +0.0
603,972 - ABIE40_RS29550 0.71 -3.6
604,006 - ABIE40_RS29550 0.75 -0.4
604,109 + ABIE40_RS29550 0.89 +1.1
604,109 + ABIE40_RS29550 0.89 -1.6
604,109 + ABIE40_RS29550 0.89 -3.5
604,206 - -3.3
604,206 - -0.2
604,206 - +0.8
604,233 + -3.1
604,259 + -2.7
604,260 - +0.5
604,277 - -1.6
604,299 - +1.0
604,313 + -3.3
604,453 - ABIE40_RS29555 0.71 -1.4
604,453 - ABIE40_RS29555 0.71 +0.1
604,494 + -4.2
604,494 + -0.4
604,494 + -2.7
604,495 - -1.1
604,648 + ABIE40_RS29560 0.12 +0.6
604,648 + ABIE40_RS29560 0.12 -0.8
604,648 + ABIE40_RS29560 0.12 +0.2
604,648 + ABIE40_RS29560 0.12 +0.2
604,648 + ABIE40_RS29560 0.12 +0.9
604,649 - ABIE40_RS29560 0.12 +2.5
604,651 - ABIE40_RS29560 0.12 +1.1
604,713 + ABIE40_RS29560 0.20 -1.2
604,714 - ABIE40_RS29560 0.20 +0.1
604,813 + ABIE40_RS29560 0.32 -1.5
604,873 + ABIE40_RS29560 0.39 -0.8
604,873 + ABIE40_RS29560 0.39 +0.8
604,873 + ABIE40_RS29560 0.39 -1.9
604,874 - ABIE40_RS29560 0.39 -0.5
604,989 + ABIE40_RS29560 0.53 +1.7
605,073 + ABIE40_RS29560 0.63 -1.2
605,074 - ABIE40_RS29560 0.63 +1.4
605,178 + ABIE40_RS29560 0.76 +1.3

Or see this region's nucleotide sequence