Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS22745 and ABIE40_RS22750 overlap by 4 nucleotides ABIE40_RS22750 and ABIE40_RS22755 are separated by 94 nucleotides ABIE40_RS22755 and ABIE40_RS22760 are separated by 3 nucleotides ABIE40_RS22760 and ABIE40_RS22765 are separated by 376 nucleotides
ABIE40_RS22745: ABIE40_RS22745 - CopD family protein, at 697,826 to 698,698
_RS22745
ABIE40_RS22750: ABIE40_RS22750 - copper homeostasis periplasmic binding protein CopC, at 698,695 to 699,060
_RS22750
ABIE40_RS22755: ABIE40_RS22755 - exopolysaccharide biosynthesis protein, at 699,155 to 699,766
_RS22755
ABIE40_RS22760: ABIE40_RS22760 - hypothetical protein, at 699,770 to 700,078
_RS22760
ABIE40_RS22765: ABIE40_RS22765 - TonB-dependent siderophore receptor, at 700,455 to 702,425
_RS22765
Position (kb) 699
700 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 698.242 kb on + strand, within ABIE40_RS22745 at 698.243 kb on - strand, within ABIE40_RS22745 at 698.243 kb on - strand, within ABIE40_RS22745 at 698.243 kb on - strand, within ABIE40_RS22745 at 698.268 kb on - strand, within ABIE40_RS22745 at 698.387 kb on + strand, within ABIE40_RS22745 at 698.400 kb on - strand, within ABIE40_RS22745 at 698.400 kb on - strand, within ABIE40_RS22745 at 698.449 kb on + strand, within ABIE40_RS22745 at 698.450 kb on - strand, within ABIE40_RS22745 at 698.450 kb on - strand, within ABIE40_RS22745 at 698.450 kb on - strand, within ABIE40_RS22745 at 698.580 kb on + strand, within ABIE40_RS22745 at 698.581 kb on - strand, within ABIE40_RS22745 at 698.704 kb on + strand at 698.704 kb on + strand at 698.705 kb on - strand at 698.705 kb on - strand at 698.705 kb on - strand at 698.705 kb on - strand at 698.771 kb on + strand, within ABIE40_RS22750 at 698.771 kb on + strand, within ABIE40_RS22750 at 698.771 kb on + strand, within ABIE40_RS22750 at 698.920 kb on + strand, within ABIE40_RS22750 at 698.920 kb on + strand, within ABIE40_RS22750 at 698.920 kb on + strand, within ABIE40_RS22750 at 698.920 kb on + strand, within ABIE40_RS22750 at 698.920 kb on + strand, within ABIE40_RS22750 at 698.921 kb on - strand, within ABIE40_RS22750 at 698.921 kb on - strand, within ABIE40_RS22750 at 698.921 kb on - strand, within ABIE40_RS22750 at 698.921 kb on - strand, within ABIE40_RS22750 at 698.921 kb on - strand, within ABIE40_RS22750 at 699.047 kb on - strand at 699.083 kb on + strand at 699.083 kb on + strand at 699.084 kb on - strand at 699.115 kb on - strand at 699.115 kb on - strand at 699.157 kb on - strand at 699.175 kb on + strand at 699.176 kb on - strand at 699.176 kb on - strand at 699.615 kb on - strand, within ABIE40_RS22755 at 699.632 kb on - strand, within ABIE40_RS22755 at 700.217 kb on - strand at 700.294 kb on - strand at 700.379 kb on + strand at 700.380 kb on - strand at 700.380 kb on - strand at 700.641 kb on + strand at 700.641 kb on + strand at 700.642 kb on - strand at 700.642 kb on - strand at 700.642 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 698,242 + ABIE40_RS22745 0.48 +1.3 698,243 - ABIE40_RS22745 0.48 +0.2 698,243 - ABIE40_RS22745 0.48 +3.0 698,243 - ABIE40_RS22745 0.48 -1.9 698,268 - ABIE40_RS22745 0.51 +1.7 698,387 + ABIE40_RS22745 0.64 +0.4 698,400 - ABIE40_RS22745 0.66 +0.9 698,400 - ABIE40_RS22745 0.66 +0.6 698,449 + ABIE40_RS22745 0.71 +0.8 698,450 - ABIE40_RS22745 0.71 -0.4 698,450 - ABIE40_RS22745 0.71 -3.2 698,450 - ABIE40_RS22745 0.71 +2.5 698,580 + ABIE40_RS22745 0.86 -0.4 698,581 - ABIE40_RS22745 0.86 +0.2 698,704 + +0.2 698,704 + -2.6 698,705 - +0.3 698,705 - -4.1 698,705 - -1.8 698,705 - -0.6 698,771 + ABIE40_RS22750 0.21 +1.0 698,771 + ABIE40_RS22750 0.21 -0.4 698,771 + ABIE40_RS22750 0.21 -1.4 698,920 + ABIE40_RS22750 0.61 +0.2 698,920 + ABIE40_RS22750 0.61 -3.6 698,920 + ABIE40_RS22750 0.61 +1.6 698,920 + ABIE40_RS22750 0.61 -1.1 698,920 + ABIE40_RS22750 0.61 -0.4 698,921 - ABIE40_RS22750 0.62 +0.6 698,921 - ABIE40_RS22750 0.62 -2.1 698,921 - ABIE40_RS22750 0.62 -0.8 698,921 - ABIE40_RS22750 0.62 -0.3 698,921 - ABIE40_RS22750 0.62 +2.3 699,047 - -1.8 699,083 + -2.4 699,083 + +1.4 699,084 - -1.9 699,115 - -0.1 699,115 - +0.1 699,157 - +0.6 699,175 + +0.8 699,176 - -0.9 699,176 - +2.1 699,615 - ABIE40_RS22755 0.75 -2.9 699,632 - ABIE40_RS22755 0.78 -0.2 700,217 - -0.2 700,294 - -1.0 700,379 + +2.6 700,380 - -0.2 700,380 - -2.8 700,641 + +1.3 700,641 + -2.1 700,642 - +3.1 700,642 - +0.7 700,642 - -0.6
Or see this region's nucleotide sequence