Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS13330

Experiment: Thymidine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Thymidine (C)
2,596,478	-		ABIE40_RS13315	0.76	+2.3
2,596,510	+		ABIE40_RS13315	0.80	-1.2
2,596,510	+		ABIE40_RS13315	0.80	-0.2
2,596,511	-		ABIE40_RS13315	0.80	+0.0
2,596,511	-		ABIE40_RS13315	0.80	-3.4
2,596,511	-		ABIE40_RS13315	0.80	-0.4
2,596,511	-		ABIE40_RS13315	0.80	-1.9
2,596,511	-		ABIE40_RS13315	0.80	+0.6
2,596,583	+		ABIE40_RS13315	0.88	-3.9
2,596,583	+		ABIE40_RS13315	0.88	-0.9
2,596,584	-		ABIE40_RS13315	0.89	+0.3
2,596,609	+				-0.2
2,596,610	-				-2.5
2,596,610	-				+0.0
2,596,679	-				+0.7
2,596,709	+				+0.8
2,596,710	-				+0.4
2,596,710	-				+1.7
2,596,722	+				-0.1
2,596,722	+				+2.6
2,596,723	-				-3.6
2,596,723	-				-1.6
2,596,744	+				+0.4
2,596,744	+				-0.4
2,596,827	-		ABIE40_RS13320	0.27	-1.3
2,596,971	-		ABIE40_RS13320	0.75	-0.8
2,596,974	-		ABIE40_RS13320	0.76	+1.1
2,596,974	-		ABIE40_RS13320	0.76	-0.1
2,596,974	-		ABIE40_RS13320	0.76	-2.8
2,597,103	+		ABIE40_RS13325	0.20	-0.5
2,597,218	-		ABIE40_RS13325	0.52	-0.3
2,597,218	-		ABIE40_RS13325	0.52	-1.6
2,597,218	-		ABIE40_RS13325	0.52	-2.2
2,597,218	-		ABIE40_RS13325	0.52	+1.5
2,597,218	-		ABIE40_RS13325	0.52	+2.4
2,597,218	-		ABIE40_RS13325	0.52	-0.8
2,597,218	-		ABIE40_RS13325	0.52	-0.4
2,597,218	-		ABIE40_RS13325	0.52	+0.5
2,597,218	-		ABIE40_RS13325	0.52	-0.0
2,597,218	-		ABIE40_RS13325	0.52	+3.6
2,597,219	+		ABIE40_RS13325	0.52	+0.6
2,597,220	-		ABIE40_RS13325	0.53	+0.5
2,597,230	+		ABIE40_RS13325	0.55	-2.9
2,597,231	-		ABIE40_RS13325	0.56	+0.6
2,597,231	-		ABIE40_RS13325	0.56	-1.2
2,597,257	-		ABIE40_RS13325	0.63	+0.4
2,597,276	+		ABIE40_RS13325	0.68	-1.7
2,597,276	+		ABIE40_RS13325	0.68	-2.1
2,597,276	+		ABIE40_RS13325	0.68	+0.7
2,597,277	-		ABIE40_RS13325	0.68	-1.7
2,597,279	+		ABIE40_RS13325	0.69	+0.8
2,597,313	+		ABIE40_RS13325	0.78	-2.7
2,597,313	+		ABIE40_RS13325	0.78	+1.3
2,597,314	-		ABIE40_RS13325	0.79	+0.0
2,597,343	+		ABIE40_RS13325	0.87	+0.3
2,597,343	+		ABIE40_RS13325	0.87	-1.8
2,597,344	-		ABIE40_RS13325	0.87	+0.0
2,597,344	-		ABIE40_RS13325	0.87	-1.0
2,597,353	+		ABIE40_RS13325	0.89	+1.2
2,597,354	-		ABIE40_RS13325	0.90	+1.3
2,597,398	-				+4.6
2,597,398	-				-2.1
2,597,398	-				-0.0
2,597,398	-				+1.2
2,597,575	+				-4.7
2,597,575	+				-2.2
2,597,576	-				+2.0
2,597,576	-				+0.0
2,597,576	-				-1.0
2,597,623	+		ABIE40_RS13330	0.10	-2.4
2,597,623	+		ABIE40_RS13330	0.10	-2.1
2,597,623	+		ABIE40_RS13330	0.10	-4.9
2,597,654	-		ABIE40_RS13330	0.12	+0.4
2,597,707	-		ABIE40_RS13330	0.15	-4.3
2,597,709	-		ABIE40_RS13330	0.15	-1.9
2,597,727	-		ABIE40_RS13330	0.16	-1.7
2,597,771	+		ABIE40_RS13330	0.19	-3.8
2,597,772	-		ABIE40_RS13330	0.19	+2.0
2,597,828	-		ABIE40_RS13330	0.22	-4.1
2,597,828	-		ABIE40_RS13330	0.22	-3.2
2,597,828	-		ABIE40_RS13330	0.22	-2.2
2,597,848	+		ABIE40_RS13330	0.23	-4.2
2,597,848	+		ABIE40_RS13330	0.23	-0.6
2,597,927	+		ABIE40_RS13330	0.28	-4.4
2,597,947	+		ABIE40_RS13330	0.29	-3.7
2,597,963	+		ABIE40_RS13330	0.30	-1.6
2,597,963	+		ABIE40_RS13330	0.30	-2.0
2,597,964	-		ABIE40_RS13330	0.30	-2.0
2,597,964	-		ABIE40_RS13330	0.30	-1.3
2,597,965	+		ABIE40_RS13330	0.30	-4.3
2,597,965	+		ABIE40_RS13330	0.30	-3.0
2,597,965	+		ABIE40_RS13330	0.30	-1.2
2,597,965	+		ABIE40_RS13330	0.30	-2.9
2,597,966	-		ABIE40_RS13330	0.30	-3.7
2,597,966	-		ABIE40_RS13330	0.30	-1.0
2,598,017	-		ABIE40_RS13330	0.33	-4.7
2,598,052	+		ABIE40_RS13330	0.35	-2.6
2,598,052	+		ABIE40_RS13330	0.35	-5.3
2,598,052	+		ABIE40_RS13330	0.35	-5.7
2,598,053	-		ABIE40_RS13330	0.35	-3.3
2,598,142	+		ABIE40_RS13330	0.41	-1.2
2,598,160	+		ABIE40_RS13330	0.42	-4.4
2,598,160	+		ABIE40_RS13330	0.42	-1.9
2,598,160	+		ABIE40_RS13330	0.42	-4.0
2,598,161	-		ABIE40_RS13330	0.42	-1.8
2,598,197	-		ABIE40_RS13330	0.44	-0.3
2,598,225	-		ABIE40_RS13330	0.45	+0.4
2,598,260	+		ABIE40_RS13330	0.47	-2.3
2,598,260	+		ABIE40_RS13330	0.47	-0.3
2,598,260	+		ABIE40_RS13330	0.47	-3.1
2,598,260	+		ABIE40_RS13330	0.47	-0.7
2,598,260	+		ABIE40_RS13330	0.47	-3.8
2,598,450	-		ABIE40_RS13330	0.59	-3.9
2,598,469	+		ABIE40_RS13330	0.60	+0.4
2,598,469	+		ABIE40_RS13330	0.60	-3.6
2,598,469	+		ABIE40_RS13330	0.60	-3.9
2,598,469	+		ABIE40_RS13330	0.60	-3.9
2,598,469	+		ABIE40_RS13330	0.60	-1.0
2,598,469	+		ABIE40_RS13330	0.60	-1.3
2,598,470	-		ABIE40_RS13330	0.60	-3.0
2,598,470	-		ABIE40_RS13330	0.60	-1.4
2,598,470	-		ABIE40_RS13330	0.60	-4.4
2,598,470	-		ABIE40_RS13330	0.60	-2.5
2,598,470	-		ABIE40_RS13330	0.60	-0.6
2,598,470	-		ABIE40_RS13330	0.60	-2.3
2,598,470	-		ABIE40_RS13330	0.60	-2.0
2,598,470	-		ABIE40_RS13330	0.60	-6.2
2,598,470	-		ABIE40_RS13330	0.60	-1.0
2,598,470	-		ABIE40_RS13330	0.60	-2.2
2,598,470	-		ABIE40_RS13330	0.60	-5.1
2,598,613	+		ABIE40_RS13330	0.68	-2.2
2,598,748	+		ABIE40_RS13330	0.76	-4.1
2,598,748	+		ABIE40_RS13330	0.76	+1.0
2,598,749	-		ABIE40_RS13330	0.76	-4.1
2,598,749	-		ABIE40_RS13330	0.76	-4.9
2,598,749	-		ABIE40_RS13330	0.76	-3.4
2,598,749	-		ABIE40_RS13330	0.76	-0.6
2,599,070	+				-1.4
2,599,070	+				-4.2
2,599,071	-				-1.6
2,599,071	-				-3.9
2,599,071	-				-3.3
2,599,082	+				-3.0
2,599,082	+				-2.5
2,599,082	+				-2.7
2,599,083	-				-1.4
2,599,096	+				-1.5
2,599,105	+				-3.7
2,599,105	+				-2.3
2,599,151	+				+0.0
2,599,151	+				-0.6
2,599,151	+				-2.2
2,599,151	+				-4.3
2,599,151	+				-3.4
2,599,152	-				-1.4
2,599,152	-				-3.0
2,599,152	-				-0.4
2,599,152	-				-3.8
2,599,194	+				-1.2
2,599,194	+				-0.6
2,599,194	+				-5.5
2,599,195	-				-1.0
2,599,195	-				+0.4
2,599,195	-				-3.1
2,599,195	-				-0.8
2,599,250	+				-4.9
2,599,250	+				-2.2
2,599,250	+				-1.8
2,599,250	+				-3.5
2,599,250	+				-4.7
2,599,251	-				+0.6
2,599,251	-				+2.1
2,599,251	-				+0.7
2,599,337	+				-3.8
2,599,338	-				+2.0
2,599,374	-				+0.4
2,599,374	-				+1.5
2,599,449	+				-2.0
2,599,449	+				-0.8
2,599,450	-				-1.3
2,599,450	-				+0.2
2,599,450	-				-1.7
2,599,450	-				+0.8
2,599,450	-				+4.0
2,599,452	-				+0.2
2,599,452	-				+1.2
2,599,502	+				-3.0
2,599,503	-				-0.6
2,599,777	-		ABIE40_RS13335	0.23	+2.7
2,599,781	+		ABIE40_RS13335	0.24	-2.7
2,599,781	+		ABIE40_RS13335	0.24	-2.0
2,599,781	+		ABIE40_RS13335	0.24	-1.6
2,599,781	+		ABIE40_RS13335	0.24	+0.0
2,599,781	+		ABIE40_RS13335	0.24	+0.0
2,599,782	-		ABIE40_RS13335	0.24	-0.0
2,599,782	-		ABIE40_RS13335	0.24	+0.7
2,599,782	-		ABIE40_RS13335	0.24	-1.7
2,599,812	-		ABIE40_RS13335	0.26	-0.2
2,599,927	+		ABIE40_RS13335	0.36	+1.8
2,599,927	+		ABIE40_RS13335	0.36	+2.0
2,599,928	-		ABIE40_RS13335	0.36	+1.8
2,599,928	-		ABIE40_RS13335	0.36	+0.8
2,599,928	-		ABIE40_RS13335	0.36	-2.9
2,599,928	-		ABIE40_RS13335	0.36	+3.0
2,599,928	-		ABIE40_RS13335	0.36	-0.3
2,599,928	-		ABIE40_RS13335	0.36	-0.3
2,599,958	+		ABIE40_RS13335	0.39	+0.4
2,599,958	+		ABIE40_RS13335	0.39	+3.0