Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS04660

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS04655 and ABIE40_RS04660 are separated by 180 nucleotidesABIE40_RS04660 and ABIE40_RS04665 are separated by 105 nucleotidesABIE40_RS04665 and ABIE40_RS04670 are separated by 297 nucleotides ABIE40_RS04655: ABIE40_RS04655 - L,D-transpeptidase, at 915,705 to 916,586 _RS04655 ABIE40_RS04660: ABIE40_RS04660 - L,D-transpeptidase, at 916,767 to 917,483 _RS04660 ABIE40_RS04665: ABIE40_RS04665 - ester cyclase, at 917,589 to 917,987 _RS04665 ABIE40_RS04670: ABIE40_RS04670 - phytanoyl-CoA dioxygenase family protein, at 918,285 to 919,250 _RS04670 Position (kb) 916 917 918Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 915.844 kb on - strand, within ABIE40_RS04655at 915.844 kb on - strand, within ABIE40_RS04655at 915.844 kb on - strand, within ABIE40_RS04655at 915.844 kb on - strand, within ABIE40_RS04655at 915.924 kb on + strand, within ABIE40_RS04655at 915.924 kb on + strand, within ABIE40_RS04655at 915.925 kb on - strand, within ABIE40_RS04655at 915.925 kb on - strand, within ABIE40_RS04655at 915.925 kb on - strand, within ABIE40_RS04655at 915.925 kb on - strand, within ABIE40_RS04655at 915.937 kb on - strand, within ABIE40_RS04655at 915.937 kb on - strand, within ABIE40_RS04655at 915.985 kb on - strand, within ABIE40_RS04655at 915.985 kb on - strand, within ABIE40_RS04655at 915.985 kb on - strand, within ABIE40_RS04655at 916.017 kb on + strand, within ABIE40_RS04655at 916.017 kb on + strand, within ABIE40_RS04655at 916.018 kb on - strand, within ABIE40_RS04655at 916.056 kb on + strand, within ABIE40_RS04655at 916.056 kb on + strand, within ABIE40_RS04655at 916.056 kb on + strand, within ABIE40_RS04655at 916.056 kb on + strand, within ABIE40_RS04655at 916.056 kb on + strand, within ABIE40_RS04655at 916.056 kb on + strand, within ABIE40_RS04655at 916.056 kb on + strand, within ABIE40_RS04655at 916.057 kb on - strand, within ABIE40_RS04655at 916.057 kb on - strand, within ABIE40_RS04655at 916.057 kb on - strand, within ABIE40_RS04655at 916.181 kb on + strand, within ABIE40_RS04655at 916.200 kb on + strand, within ABIE40_RS04655at 916.200 kb on + strand, within ABIE40_RS04655at 916.200 kb on + strand, within ABIE40_RS04655at 916.200 kb on + strand, within ABIE40_RS04655at 916.201 kb on - strand, within ABIE40_RS04655at 916.201 kb on - strand, within ABIE40_RS04655at 916.201 kb on - strand, within ABIE40_RS04655at 916.215 kb on - strand, within ABIE40_RS04655at 916.215 kb on - strand, within ABIE40_RS04655at 916.261 kb on - strand, within ABIE40_RS04655at 916.422 kb on + strand, within ABIE40_RS04655at 916.422 kb on + strand, within ABIE40_RS04655at 916.422 kb on + strand, within ABIE40_RS04655at 916.423 kb on - strand, within ABIE40_RS04655at 916.423 kb on - strand, within ABIE40_RS04655at 916.423 kb on - strand, within ABIE40_RS04655at 916.424 kb on + strand, within ABIE40_RS04655at 916.453 kb on - strand, within ABIE40_RS04655at 916.453 kb on - strand, within ABIE40_RS04655at 916.513 kb on + strandat 916.513 kb on + strandat 916.514 kb on - strandat 916.514 kb on - strandat 916.514 kb on - strandat 916.514 kb on - strandat 916.514 kb on - strandat 916.546 kb on - strandat 916.584 kb on + strandat 916.584 kb on + strandat 916.585 kb on - strandat 916.585 kb on - strandat 916.585 kb on - strandat 916.585 kb on - strandat 916.585 kb on - strandat 916.585 kb on - strandat 916.607 kb on + strandat 916.644 kb on + strandat 916.644 kb on + strandat 916.645 kb on - strandat 916.645 kb on - strandat 916.645 kb on - strandat 916.651 kb on + strandat 916.652 kb on - strandat 916.652 kb on - strandat 916.652 kb on - strandat 916.652 kb on - strandat 916.656 kb on - strandat 916.859 kb on + strand, within ABIE40_RS04660at 916.859 kb on + strand, within ABIE40_RS04660at 916.859 kb on + strand, within ABIE40_RS04660at 916.859 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.950 kb on + strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 916.951 kb on - strand, within ABIE40_RS04660at 917.094 kb on + strand, within ABIE40_RS04660at 917.094 kb on + strand, within ABIE40_RS04660at 917.095 kb on - strand, within ABIE40_RS04660at 917.095 kb on - strand, within ABIE40_RS04660at 917.095 kb on - strand, within ABIE40_RS04660at 917.095 kb on - strand, within ABIE40_RS04660at 917.095 kb on - strand, within ABIE40_RS04660at 917.095 kb on - strand, within ABIE40_RS04660at 917.253 kb on + strand, within ABIE40_RS04660at 917.253 kb on + strand, within ABIE40_RS04660at 917.316 kb on + strand, within ABIE40_RS04660at 917.316 kb on + strand, within ABIE40_RS04660at 917.316 kb on + strand, within ABIE40_RS04660at 917.316 kb on + strand, within ABIE40_RS04660at 917.317 kb on - strand, within ABIE40_RS04660at 917.317 kb on - strand, within ABIE40_RS04660at 917.317 kb on - strand, within ABIE40_RS04660at 917.346 kb on + strand, within ABIE40_RS04660at 917.439 kb on + strandat 917.481 kb on + strandat 917.481 kb on + strandat 917.481 kb on + strandat 917.482 kb on - strandat 917.543 kb on + strandat 917.543 kb on + strandat 917.543 kb on + strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.544 kb on - strandat 917.545 kb on - strandat 917.582 kb on + strandat 917.582 kb on + strandat 917.582 kb on + strandat 917.582 kb on + strandat 917.583 kb on - strandat 917.583 kb on - strandat 917.583 kb on - strandat 917.583 kb on - strandat 917.583 kb on - strandat 917.584 kb on + strandat 917.584 kb on + strandat 917.668 kb on + strand, within ABIE40_RS04665at 917.668 kb on + strand, within ABIE40_RS04665at 917.668 kb on + strand, within ABIE40_RS04665at 917.828 kb on - strand, within ABIE40_RS04665at 917.876 kb on + strand, within ABIE40_RS04665at 917.876 kb on + strand, within ABIE40_RS04665at 917.876 kb on + strand, within ABIE40_RS04665at 917.877 kb on - strand, within ABIE40_RS04665at 917.877 kb on - strand, within ABIE40_RS04665at 917.942 kb on + strand, within ABIE40_RS04665at 917.942 kb on + strand, within ABIE40_RS04665at 917.943 kb on - strand, within ABIE40_RS04665at 917.945 kb on - strand, within ABIE40_RS04665at 917.945 kb on - strand, within ABIE40_RS04665at 917.945 kb on - strand, within ABIE40_RS04665at 917.953 kb on + strandat 918.024 kb on + strandat 918.038 kb on + strandat 918.038 kb on + strandat 918.278 kb on + strandat 918.378 kb on + strandat 918.378 kb on + strandat 918.378 kb on + strandat 918.378 kb on + strandat 918.378 kb on + strandat 918.379 kb on - strandat 918.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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915,844 - ABIE40_RS04655 0.16 -1.3
915,844 - ABIE40_RS04655 0.16 -0.2
915,844 - ABIE40_RS04655 0.16 -0.8
915,844 - ABIE40_RS04655 0.16 -1.2
915,924 + ABIE40_RS04655 0.25 +0.2
915,924 + ABIE40_RS04655 0.25 +1.0
915,925 - ABIE40_RS04655 0.25 +0.9
915,925 - ABIE40_RS04655 0.25 +0.1
915,925 - ABIE40_RS04655 0.25 +0.1
915,925 - ABIE40_RS04655 0.25 +2.5
915,937 - ABIE40_RS04655 0.26 +0.5
915,937 - ABIE40_RS04655 0.26 -1.5
915,985 - ABIE40_RS04655 0.32 +2.4
915,985 - ABIE40_RS04655 0.32 +2.5
915,985 - ABIE40_RS04655 0.32 -0.5
916,017 + ABIE40_RS04655 0.35 +1.3
916,017 + ABIE40_RS04655 0.35 -1.6
916,018 - ABIE40_RS04655 0.35 -0.2
916,056 + ABIE40_RS04655 0.40 -1.0
916,056 + ABIE40_RS04655 0.40 -0.8
916,056 + ABIE40_RS04655 0.40 -0.2
916,056 + ABIE40_RS04655 0.40 +0.9
916,056 + ABIE40_RS04655 0.40 -0.3
916,056 + ABIE40_RS04655 0.40 +2.1
916,056 + ABIE40_RS04655 0.40 -0.2
916,057 - ABIE40_RS04655 0.40 -0.9
916,057 - ABIE40_RS04655 0.40 +1.3
916,057 - ABIE40_RS04655 0.40 -0.5
916,181 + ABIE40_RS04655 0.54 +0.3
916,200 + ABIE40_RS04655 0.56 +3.4
916,200 + ABIE40_RS04655 0.56 +0.6
916,200 + ABIE40_RS04655 0.56 +0.3
916,200 + ABIE40_RS04655 0.56 -0.6
916,201 - ABIE40_RS04655 0.56 +1.7
916,201 - ABIE40_RS04655 0.56 -0.5
916,201 - ABIE40_RS04655 0.56 -3.4
916,215 - ABIE40_RS04655 0.58 +0.1
916,215 - ABIE40_RS04655 0.58 +2.1
916,261 - ABIE40_RS04655 0.63 -1.6
916,422 + ABIE40_RS04655 0.81 -0.7
916,422 + ABIE40_RS04655 0.81 +0.6
916,422 + ABIE40_RS04655 0.81 -4.5
916,423 - ABIE40_RS04655 0.81 +1.2
916,423 - ABIE40_RS04655 0.81 -2.6
916,423 - ABIE40_RS04655 0.81 +0.6
916,424 + ABIE40_RS04655 0.82 -2.7
916,453 - ABIE40_RS04655 0.85 +2.3
916,453 - ABIE40_RS04655 0.85 -1.8
916,513 + -0.6
916,513 + +0.2
916,514 - +3.6
916,514 - -4.4
916,514 - -1.0
916,514 - -1.4
916,514 - +0.1
916,546 - -0.7
916,584 + +1.7
916,584 + -2.7
916,585 - +2.1
916,585 - -1.2
916,585 - -2.5
916,585 - -4.0
916,585 - -1.7
916,585 - -0.9
916,607 + -0.2
916,644 + -0.7
916,644 + +0.9
916,645 - +1.0
916,645 - -1.4
916,645 - +2.4
916,651 + +0.5
916,652 - -0.5
916,652 - +0.2
916,652 - -4.2
916,652 - +1.7
916,656 - +0.4
916,859 + ABIE40_RS04660 0.13 +2.8
916,859 + ABIE40_RS04660 0.13 -1.0
916,859 + ABIE40_RS04660 0.13 -1.2
916,859 + ABIE40_RS04660 0.13 +1.3
916,950 + ABIE40_RS04660 0.26 -1.5
916,950 + ABIE40_RS04660 0.26 -0.4
916,950 + ABIE40_RS04660 0.26 +0.1
916,950 + ABIE40_RS04660 0.26 -0.0
916,950 + ABIE40_RS04660 0.26 +1.8
916,950 + ABIE40_RS04660 0.26 -4.5
916,950 + ABIE40_RS04660 0.26 +1.0
916,950 + ABIE40_RS04660 0.26 +0.5
916,950 + ABIE40_RS04660 0.26 +0.4
916,951 - ABIE40_RS04660 0.26 -3.1
916,951 - ABIE40_RS04660 0.26 +0.6
916,951 - ABIE40_RS04660 0.26 +0.0
916,951 - ABIE40_RS04660 0.26 -0.8
916,951 - ABIE40_RS04660 0.26 -1.7
916,951 - ABIE40_RS04660 0.26 +2.6
916,951 - ABIE40_RS04660 0.26 -0.5
916,951 - ABIE40_RS04660 0.26 -0.9
916,951 - ABIE40_RS04660 0.26 -1.5
916,951 - ABIE40_RS04660 0.26 +1.5
916,951 - ABIE40_RS04660 0.26 -0.7
917,094 + ABIE40_RS04660 0.46 +1.2
917,094 + ABIE40_RS04660 0.46 -4.1
917,095 - ABIE40_RS04660 0.46 +2.1
917,095 - ABIE40_RS04660 0.46 +0.4
917,095 - ABIE40_RS04660 0.46 -2.2
917,095 - ABIE40_RS04660 0.46 -2.6
917,095 - ABIE40_RS04660 0.46 -2.6
917,095 - ABIE40_RS04660 0.46 -0.8
917,253 + ABIE40_RS04660 0.68 +0.3
917,253 + ABIE40_RS04660 0.68 -0.7
917,316 + ABIE40_RS04660 0.77 -0.6
917,316 + ABIE40_RS04660 0.77 +0.7
917,316 + ABIE40_RS04660 0.77 +1.0
917,316 + ABIE40_RS04660 0.77 -0.2
917,317 - ABIE40_RS04660 0.77 -0.4
917,317 - ABIE40_RS04660 0.77 +1.3
917,317 - ABIE40_RS04660 0.77 -3.1
917,346 + ABIE40_RS04660 0.81 -1.1
917,439 + +0.0
917,481 + -3.2
917,481 + +0.9
917,481 + +1.9
917,482 - +1.6
917,543 + -4.8
917,543 + +0.4
917,543 + +0.5
917,544 - -3.6
917,544 - +1.2
917,544 - -3.3
917,544 - +0.5
917,544 - +0.7
917,544 - +0.4
917,544 - -3.0
917,544 - -0.1
917,544 - -2.3
917,545 - -0.9
917,582 + +2.8
917,582 + -3.5
917,582 + +1.7
917,582 + -2.6
917,583 - -0.1
917,583 - -5.0
917,583 - -0.5
917,583 - +2.1
917,583 - -1.0
917,584 + -1.6
917,584 + -1.9
917,668 + ABIE40_RS04665 0.20 -1.4
917,668 + ABIE40_RS04665 0.20 +0.5
917,668 + ABIE40_RS04665 0.20 -2.3
917,828 - ABIE40_RS04665 0.60 -1.5
917,876 + ABIE40_RS04665 0.72 +0.1
917,876 + ABIE40_RS04665 0.72 +1.6
917,876 + ABIE40_RS04665 0.72 -1.3
917,877 - ABIE40_RS04665 0.72 -0.2
917,877 - ABIE40_RS04665 0.72 -1.3
917,942 + ABIE40_RS04665 0.88 +0.0
917,942 + ABIE40_RS04665 0.88 -2.4
917,943 - ABIE40_RS04665 0.89 -0.8
917,945 - ABIE40_RS04665 0.89 -3.3
917,945 - ABIE40_RS04665 0.89 +0.4
917,945 - ABIE40_RS04665 0.89 -3.4
917,953 + +1.9
918,024 + -2.3
918,038 + +1.0
918,038 + -0.7
918,278 + +2.3
918,378 + +1.6
918,378 + +1.7
918,378 + +1.9
918,378 + +0.9
918,378 + +3.1
918,379 - -0.1
918,379 - -2.5

Or see this region's nucleotide sequence