Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04030 and ABIE40_RS04035 are separated by 126 nucleotides ABIE40_RS04035 and ABIE40_RS04040 are separated by 103 nucleotides ABIE40_RS04040 and ABIE40_RS04045 are separated by 6 nucleotides ABIE40_RS04045 and ABIE40_RS04050 are separated by 17 nucleotides
ABIE40_RS04030: ABIE40_RS04030 - AraC family transcriptional regulator, at 800,002 to 800,982
_RS04030
ABIE40_RS04035: ABIE40_RS04035 - aldehyde reductase, at 801,109 to 802,140
_RS04035
ABIE40_RS04040: ABIE40_RS04040 - pyrophosphatase, at 802,244 to 802,543
_RS04040
ABIE40_RS04045: ABIE40_RS04045 - GNAT family N-acetyltransferase, at 802,550 to 803,041
_RS04045
ABIE40_RS04050: ABIE40_RS04050 - metalloprotease TldD, at 803,059 to 804,474
_RS04050
Position (kb) 801
802
803 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 800.145 kb on + strand, within ABIE40_RS04030 at 800.145 kb on + strand, within ABIE40_RS04030 at 800.145 kb on + strand, within ABIE40_RS04030 at 800.145 kb on + strand, within ABIE40_RS04030 at 800.145 kb on + strand, within ABIE40_RS04030 at 800.145 kb on + strand, within ABIE40_RS04030 at 800.146 kb on - strand, within ABIE40_RS04030 at 800.146 kb on - strand, within ABIE40_RS04030 at 800.146 kb on - strand, within ABIE40_RS04030 at 800.146 kb on - strand, within ABIE40_RS04030 at 800.146 kb on - strand, within ABIE40_RS04030 at 800.146 kb on - strand, within ABIE40_RS04030 at 800.147 kb on + strand, within ABIE40_RS04030 at 800.147 kb on + strand, within ABIE40_RS04030 at 800.148 kb on - strand, within ABIE40_RS04030 at 800.234 kb on + strand, within ABIE40_RS04030 at 800.235 kb on - strand, within ABIE40_RS04030 at 800.647 kb on - strand, within ABIE40_RS04030 at 800.648 kb on + strand, within ABIE40_RS04030 at 800.648 kb on + strand, within ABIE40_RS04030 at 800.649 kb on - strand, within ABIE40_RS04030 at 801.044 kb on + strand at 801.045 kb on - strand at 801.045 kb on - strand at 801.045 kb on - strand at 801.103 kb on + strand at 801.103 kb on + strand at 801.103 kb on + strand at 801.103 kb on + strand at 801.103 kb on + strand at 801.104 kb on - strand at 801.104 kb on - strand at 801.108 kb on + strand at 801.108 kb on + strand at 801.108 kb on + strand at 801.109 kb on - strand at 801.109 kb on - strand at 801.109 kb on - strand at 801.109 kb on - strand at 801.132 kb on - strand at 801.160 kb on + strand at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.347 kb on - strand, within ABIE40_RS04035 at 801.347 kb on - strand, within ABIE40_RS04035 at 801.347 kb on - strand, within ABIE40_RS04035 at 801.347 kb on - strand, within ABIE40_RS04035 at 801.347 kb on - strand, within ABIE40_RS04035 at 801.347 kb on - strand, within ABIE40_RS04035 at 801.580 kb on + strand, within ABIE40_RS04035 at 801.679 kb on + strand, within ABIE40_RS04035 at 801.680 kb on - strand, within ABIE40_RS04035 at 802.018 kb on + strand, within ABIE40_RS04035 at 802.018 kb on + strand, within ABIE40_RS04035 at 802.018 kb on + strand, within ABIE40_RS04035 at 802.018 kb on + strand, within ABIE40_RS04035 at 802.195 kb on + strand at 802.195 kb on + strand at 802.196 kb on - strand at 802.196 kb on - strand at 802.196 kb on - strand at 802.196 kb on - strand at 802.196 kb on - strand at 802.226 kb on + strand at 802.244 kb on - strand at 802.290 kb on - strand, within ABIE40_RS04040 at 802.542 kb on - strand at 802.610 kb on + strand, within ABIE40_RS04045 at 802.610 kb on + strand, within ABIE40_RS04045 at 802.610 kb on + strand, within ABIE40_RS04045 at 802.611 kb on - strand, within ABIE40_RS04045 at 803.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 800,145 + ABIE40_RS04030 0.15 -1.2 800,145 + ABIE40_RS04030 0.15 -0.8 800,145 + ABIE40_RS04030 0.15 -0.7 800,145 + ABIE40_RS04030 0.15 -1.8 800,145 + ABIE40_RS04030 0.15 +3.1 800,145 + ABIE40_RS04030 0.15 -2.0 800,146 - ABIE40_RS04030 0.15 +0.2 800,146 - ABIE40_RS04030 0.15 -0.2 800,146 - ABIE40_RS04030 0.15 -0.4 800,146 - ABIE40_RS04030 0.15 -0.6 800,146 - ABIE40_RS04030 0.15 -0.0 800,146 - ABIE40_RS04030 0.15 +0.9 800,147 + ABIE40_RS04030 0.15 -0.2 800,147 + ABIE40_RS04030 0.15 -2.4 800,148 - ABIE40_RS04030 0.15 +0.6 800,234 + ABIE40_RS04030 0.24 -2.0 800,235 - ABIE40_RS04030 0.24 -2.6 800,647 - ABIE40_RS04030 0.66 +0.3 800,648 + ABIE40_RS04030 0.66 -2.8 800,648 + ABIE40_RS04030 0.66 +1.7 800,649 - ABIE40_RS04030 0.66 +0.2 801,044 + +0.7 801,045 - -0.3 801,045 - +2.6 801,045 - +1.0 801,103 + +0.0 801,103 + +1.5 801,103 + +1.3 801,103 + -3.8 801,103 + +1.3 801,104 - +1.9 801,104 - -0.7 801,108 + +1.5 801,108 + -0.1 801,108 + +1.1 801,109 - +0.3 801,109 - -1.2 801,109 - -0.1 801,109 - +1.2 801,132 - -0.3 801,160 + -2.6 801,346 + ABIE40_RS04035 0.23 +1.0 801,346 + ABIE40_RS04035 0.23 +1.8 801,346 + ABIE40_RS04035 0.23 +1.0 801,346 + ABIE40_RS04035 0.23 -1.4 801,346 + ABIE40_RS04035 0.23 +1.3 801,346 + ABIE40_RS04035 0.23 +3.6 801,346 + ABIE40_RS04035 0.23 +1.8 801,346 + ABIE40_RS04035 0.23 +0.5 801,346 + ABIE40_RS04035 0.23 +0.8 801,346 + ABIE40_RS04035 0.23 +0.2 801,346 + ABIE40_RS04035 0.23 -0.9 801,346 + ABIE40_RS04035 0.23 +0.2 801,346 + ABIE40_RS04035 0.23 -1.7 801,346 + ABIE40_RS04035 0.23 +1.3 801,346 + ABIE40_RS04035 0.23 +2.3 801,347 - ABIE40_RS04035 0.23 -1.2 801,347 - ABIE40_RS04035 0.23 +1.3 801,347 - ABIE40_RS04035 0.23 -1.2 801,347 - ABIE40_RS04035 0.23 +0.5 801,347 - ABIE40_RS04035 0.23 -0.6 801,347 - ABIE40_RS04035 0.23 -0.2 801,580 + ABIE40_RS04035 0.46 -0.2 801,679 + ABIE40_RS04035 0.55 +2.2 801,680 - ABIE40_RS04035 0.55 -3.6 802,018 + ABIE40_RS04035 0.88 -0.2 802,018 + ABIE40_RS04035 0.88 -1.6 802,018 + ABIE40_RS04035 0.88 +5.8 802,018 + ABIE40_RS04035 0.88 -3.3 802,195 + -0.4 802,195 + -4.0 802,196 - +1.5 802,196 - +0.5 802,196 - -0.1 802,196 - -1.9 802,196 - -3.3 802,226 + -0.8 802,244 - +1.5 802,290 - ABIE40_RS04040 0.15 -0.6 802,542 - -0.0 802,610 + ABIE40_RS04045 0.12 -2.9 802,610 + ABIE40_RS04045 0.12 -0.1 802,610 + ABIE40_RS04045 0.12 +2.5 802,611 - ABIE40_RS04045 0.12 +1.2 803,084 - -0.1
Or see this region's nucleotide sequence