Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03455 and ABIE40_RS03460 are separated by 39 nucleotides ABIE40_RS03460 and ABIE40_RS03465 are separated by 292 nucleotides
ABIE40_RS03455: ABIE40_RS03455 - MBL fold metallo-hydrolase, at 686,630 to 687,619
_RS03455
ABIE40_RS03460: ABIE40_RS03460 - SAM-dependent methyltransferase, at 687,659 to 688,270
_RS03460
ABIE40_RS03465: ABIE40_RS03465 - IMP dehydrogenase, at 688,563 to 690,047
_RS03465
Position (kb) 687
688
689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 686.740 kb on + strand, within ABIE40_RS03455 at 686.740 kb on + strand, within ABIE40_RS03455 at 686.746 kb on + strand, within ABIE40_RS03455 at 686.747 kb on - strand, within ABIE40_RS03455 at 686.747 kb on - strand, within ABIE40_RS03455 at 686.933 kb on + strand, within ABIE40_RS03455 at 686.933 kb on + strand, within ABIE40_RS03455 at 686.933 kb on + strand, within ABIE40_RS03455 at 686.933 kb on + strand, within ABIE40_RS03455 at 686.933 kb on + strand, within ABIE40_RS03455 at 686.933 kb on + strand, within ABIE40_RS03455 at 686.934 kb on - strand, within ABIE40_RS03455 at 686.934 kb on - strand, within ABIE40_RS03455 at 686.934 kb on - strand, within ABIE40_RS03455 at 686.934 kb on - strand, within ABIE40_RS03455 at 686.934 kb on - strand, within ABIE40_RS03455 at 687.088 kb on + strand, within ABIE40_RS03455 at 687.088 kb on + strand, within ABIE40_RS03455 at 687.088 kb on + strand, within ABIE40_RS03455 at 687.088 kb on + strand, within ABIE40_RS03455 at 687.088 kb on + strand, within ABIE40_RS03455 at 687.089 kb on - strand, within ABIE40_RS03455 at 687.089 kb on - strand, within ABIE40_RS03455 at 687.103 kb on + strand, within ABIE40_RS03455 at 687.153 kb on - strand, within ABIE40_RS03455 at 687.153 kb on - strand, within ABIE40_RS03455 at 687.153 kb on - strand, within ABIE40_RS03455 at 687.173 kb on + strand, within ABIE40_RS03455 at 687.174 kb on - strand, within ABIE40_RS03455 at 687.307 kb on + strand, within ABIE40_RS03455 at 687.307 kb on + strand, within ABIE40_RS03455 at 687.408 kb on - strand, within ABIE40_RS03455 at 687.408 kb on - strand, within ABIE40_RS03455 at 687.602 kb on + strand at 687.602 kb on + strand at 687.602 kb on + strand at 687.602 kb on + strand at 687.602 kb on + strand at 687.602 kb on + strand at 687.602 kb on + strand at 687.603 kb on - strand at 687.603 kb on - strand at 687.603 kb on - strand at 687.603 kb on - strand at 687.603 kb on - strand at 687.613 kb on + strand at 687.711 kb on + strand at 687.712 kb on - strand at 687.712 kb on - strand at 687.813 kb on + strand, within ABIE40_RS03460 at 687.813 kb on + strand, within ABIE40_RS03460 at 687.814 kb on - strand, within ABIE40_RS03460 at 687.814 kb on - strand, within ABIE40_RS03460 at 687.826 kb on - strand, within ABIE40_RS03460 at 687.826 kb on - strand, within ABIE40_RS03460 at 687.826 kb on - strand, within ABIE40_RS03460 at 688.018 kb on + strand, within ABIE40_RS03460 at 688.237 kb on + strand at 688.237 kb on + strand at 688.237 kb on + strand at 688.238 kb on - strand at 688.238 kb on - strand at 688.238 kb on - strand at 688.301 kb on + strand at 688.301 kb on + strand at 688.301 kb on + strand at 688.301 kb on + strand at 688.301 kb on + strand at 688.302 kb on - strand at 688.302 kb on - strand at 688.400 kb on + strand at 688.400 kb on + strand at 688.461 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 686,740 + ABIE40_RS03455 0.11 -0.3 686,740 + ABIE40_RS03455 0.11 -1.7 686,746 + ABIE40_RS03455 0.12 -2.0 686,747 - ABIE40_RS03455 0.12 -2.9 686,747 - ABIE40_RS03455 0.12 -0.4 686,933 + ABIE40_RS03455 0.31 +1.1 686,933 + ABIE40_RS03455 0.31 +0.9 686,933 + ABIE40_RS03455 0.31 -1.9 686,933 + ABIE40_RS03455 0.31 +0.5 686,933 + ABIE40_RS03455 0.31 -3.5 686,933 + ABIE40_RS03455 0.31 +0.8 686,934 - ABIE40_RS03455 0.31 -1.7 686,934 - ABIE40_RS03455 0.31 -1.2 686,934 - ABIE40_RS03455 0.31 -3.1 686,934 - ABIE40_RS03455 0.31 +1.9 686,934 - ABIE40_RS03455 0.31 -0.8 687,088 + ABIE40_RS03455 0.46 +0.3 687,088 + ABIE40_RS03455 0.46 +1.0 687,088 + ABIE40_RS03455 0.46 +1.6 687,088 + ABIE40_RS03455 0.46 +0.7 687,088 + ABIE40_RS03455 0.46 -1.0 687,089 - ABIE40_RS03455 0.46 +0.6 687,089 - ABIE40_RS03455 0.46 -1.3 687,103 + ABIE40_RS03455 0.48 -1.9 687,153 - ABIE40_RS03455 0.53 -2.2 687,153 - ABIE40_RS03455 0.53 +1.0 687,153 - ABIE40_RS03455 0.53 +0.2 687,173 + ABIE40_RS03455 0.55 -2.6 687,174 - ABIE40_RS03455 0.55 -1.1 687,307 + ABIE40_RS03455 0.68 -0.9 687,307 + ABIE40_RS03455 0.68 +1.1 687,408 - ABIE40_RS03455 0.79 +0.5 687,408 - ABIE40_RS03455 0.79 +1.2 687,602 + -0.5 687,602 + -2.5 687,602 + -0.8 687,602 + +0.2 687,602 + -2.8 687,602 + -2.3 687,602 + -0.4 687,603 - -1.3 687,603 - +0.2 687,603 - -1.4 687,603 - -1.2 687,603 - +0.8 687,613 + +0.5 687,711 + -1.3 687,712 - -2.6 687,712 - -1.7 687,813 + ABIE40_RS03460 0.25 +0.5 687,813 + ABIE40_RS03460 0.25 -3.1 687,814 - ABIE40_RS03460 0.25 +0.9 687,814 - ABIE40_RS03460 0.25 +0.2 687,826 - ABIE40_RS03460 0.27 +0.7 687,826 - ABIE40_RS03460 0.27 +0.7 687,826 - ABIE40_RS03460 0.27 +2.2 688,018 + ABIE40_RS03460 0.59 -0.1 688,237 + -0.4 688,237 + +0.2 688,237 + -0.9 688,238 - +0.2 688,238 - +1.5 688,238 - -0.1 688,301 + +0.1 688,301 + -0.3 688,301 + +0.6 688,301 + -1.4 688,301 + +0.6 688,302 - +2.6 688,302 - -1.5 688,400 + +3.1 688,400 + +0.3 688,461 + -0.2
Or see this region's nucleotide sequence