Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24090 and ABID97_RS24095 are separated by 6 nucleotides ABID97_RS24095 and ABID97_RS24100 are separated by 171 nucleotides ABID97_RS24100 and ABID97_RS24105 overlap by 58 nucleotides ABID97_RS24105 and ABID97_RS24110 overlap by 4 nucleotides
ABID97_RS24090: ABID97_RS24090 - DoxX family protein, at 4,977,977 to 4,978,453
_RS24090
ABID97_RS24095: ABID97_RS24095 - Crp/Fnr family transcriptional regulator, at 4,978,460 to 4,979,071
_RS24095
ABID97_RS24100: ABID97_RS24100 - adenylate/guanylate cyclase domain-containing protein, at 4,979,243 to 4,980,949
_RS24100
ABID97_RS24105: ABID97_RS24105 - RNA 3'-terminal phosphate cyclase, at 4,980,892 to 4,981,932
_RS24105
ABID97_RS24110: ABID97_RS24110 - nucleotidyltransferase domain-containing protein, at 4,981,929 to 4,982,783
_RS24110
Position (kb) 4979
4980
4981 Strain fitness (log2 ratio) -1
0
1 at 4978.374 kb on - strand, within ABID97_RS24090 at 4978.374 kb on - strand, within ABID97_RS24090 at 4978.983 kb on + strand, within ABID97_RS24095 at 4979.214 kb on + strand at 4979.214 kb on + strand at 4979.214 kb on + strand at 4979.333 kb on + strand at 4979.333 kb on + strand at 4979.334 kb on - strand at 4979.334 kb on - strand at 4979.334 kb on - strand at 4979.334 kb on - strand at 4979.334 kb on - strand at 4979.334 kb on - strand at 4979.360 kb on - strand at 4979.360 kb on - strand at 4979.360 kb on - strand at 4979.360 kb on - strand at 4979.450 kb on + strand, within ABID97_RS24100 at 4979.506 kb on + strand, within ABID97_RS24100 at 4979.612 kb on + strand, within ABID97_RS24100 at 4979.630 kb on + strand, within ABID97_RS24100 at 4979.630 kb on + strand, within ABID97_RS24100 at 4979.631 kb on - strand, within ABID97_RS24100 at 4979.631 kb on - strand, within ABID97_RS24100 at 4979.915 kb on + strand, within ABID97_RS24100 at 4979.915 kb on + strand, within ABID97_RS24100 at 4980.413 kb on + strand, within ABID97_RS24100 at 4980.413 kb on + strand, within ABID97_RS24100 at 4980.413 kb on + strand, within ABID97_RS24100 at 4980.414 kb on - strand, within ABID97_RS24100 at 4980.414 kb on - strand, within ABID97_RS24100 at 4980.414 kb on - strand, within ABID97_RS24100 at 4980.428 kb on + strand, within ABID97_RS24100 at 4980.645 kb on + strand, within ABID97_RS24100 at 4980.645 kb on + strand, within ABID97_RS24100 at 4980.645 kb on + strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.947 kb on + strand at 4980.947 kb on + strand at 4981.208 kb on + strand, within ABID97_RS24105 at 4981.209 kb on - strand, within ABID97_RS24105 at 4981.881 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 4,978,374 - ABID97_RS24090 0.83 +0.3 4,978,374 - ABID97_RS24090 0.83 -0.3 4,978,983 + ABID97_RS24095 0.85 -0.0 4,979,214 + -0.5 4,979,214 + -0.3 4,979,214 + +0.3 4,979,333 + -0.3 4,979,333 + +0.1 4,979,334 - -0.4 4,979,334 - +0.2 4,979,334 - +0.1 4,979,334 - -0.3 4,979,334 - -0.1 4,979,334 - +0.3 4,979,360 - -0.3 4,979,360 - +0.3 4,979,360 - -1.0 4,979,360 - -0.0 4,979,450 + ABID97_RS24100 0.12 -0.1 4,979,506 + ABID97_RS24100 0.15 -1.5 4,979,612 + ABID97_RS24100 0.22 -0.3 4,979,630 + ABID97_RS24100 0.23 +0.1 4,979,630 + ABID97_RS24100 0.23 -0.6 4,979,631 - ABID97_RS24100 0.23 -0.0 4,979,631 - ABID97_RS24100 0.23 -0.1 4,979,915 + ABID97_RS24100 0.39 -0.1 4,979,915 + ABID97_RS24100 0.39 -0.5 4,980,413 + ABID97_RS24100 0.69 -0.2 4,980,413 + ABID97_RS24100 0.69 +0.1 4,980,413 + ABID97_RS24100 0.69 -0.2 4,980,414 - ABID97_RS24100 0.69 -0.1 4,980,414 - ABID97_RS24100 0.69 -0.4 4,980,414 - ABID97_RS24100 0.69 -0.4 4,980,428 + ABID97_RS24100 0.69 -0.6 4,980,645 + ABID97_RS24100 0.82 -0.8 4,980,645 + ABID97_RS24100 0.82 -0.2 4,980,645 + ABID97_RS24100 0.82 -1.2 4,980,646 - ABID97_RS24100 0.82 +0.3 4,980,646 - ABID97_RS24100 0.82 +1.0 4,980,646 - ABID97_RS24100 0.82 +0.1 4,980,646 - ABID97_RS24100 0.82 +0.2 4,980,646 - ABID97_RS24100 0.82 +0.3 4,980,947 + -0.1 4,980,947 + +0.7 4,981,208 + ABID97_RS24105 0.30 -0.3 4,981,209 - ABID97_RS24105 0.30 -0.2 4,981,881 + +0.5
Or see this region's nucleotide sequence