Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10010

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10000 and ABID97_RS10005 are separated by 76 nucleotidesABID97_RS10005 and ABID97_RS10010 are separated by 197 nucleotidesABID97_RS10010 and ABID97_RS10015 overlap by 4 nucleotides ABID97_RS10000: ABID97_RS10000 - cation diffusion facilitator family transporter, at 2,078,275 to 2,079,219 _RS10000 ABID97_RS10005: ABID97_RS10005 - hypothetical protein, at 2,079,296 to 2,079,481 _RS10005 ABID97_RS10010: ABID97_RS10010 - ATPase domain-containing protein, at 2,079,679 to 2,081,178 _RS10010 ABID97_RS10015: ABID97_RS10015 - ATP-binding protein, at 2,081,175 to 2,082,725 _RS10015 Position (kb) 2079 2080 2081 2082Strain fitness (log2 ratio) -2 -1 0 1at 2078.744 kb on - strand, within ABID97_RS10000at 2078.744 kb on - strand, within ABID97_RS10000at 2078.806 kb on + strand, within ABID97_RS10000at 2078.806 kb on + strand, within ABID97_RS10000at 2078.806 kb on + strand, within ABID97_RS10000at 2078.807 kb on - strand, within ABID97_RS10000at 2078.807 kb on - strand, within ABID97_RS10000at 2079.017 kb on - strand, within ABID97_RS10000at 2079.017 kb on - strand, within ABID97_RS10000at 2079.017 kb on - strand, within ABID97_RS10000at 2079.017 kb on - strand, within ABID97_RS10000at 2079.534 kb on + strandat 2079.664 kb on - strandat 2079.788 kb on - strandat 2079.877 kb on + strand, within ABID97_RS10010at 2080.003 kb on + strand, within ABID97_RS10010at 2080.003 kb on + strand, within ABID97_RS10010at 2080.003 kb on + strand, within ABID97_RS10010at 2080.004 kb on - strand, within ABID97_RS10010at 2080.004 kb on - strand, within ABID97_RS10010at 2080.004 kb on - strand, within ABID97_RS10010at 2080.004 kb on - strand, within ABID97_RS10010at 2080.294 kb on + strand, within ABID97_RS10010at 2080.330 kb on + strand, within ABID97_RS10010at 2080.367 kb on - strand, within ABID97_RS10010at 2080.626 kb on + strand, within ABID97_RS10010at 2080.627 kb on - strand, within ABID97_RS10010at 2080.627 kb on - strand, within ABID97_RS10010at 2080.957 kb on + strand, within ABID97_RS10010at 2080.957 kb on + strand, within ABID97_RS10010at 2080.957 kb on + strand, within ABID97_RS10010at 2080.987 kb on + strand, within ABID97_RS10010at 2080.988 kb on - strand, within ABID97_RS10010at 2081.581 kb on - strand, within ABID97_RS10015at 2081.742 kb on + strand, within ABID97_RS10015at 2081.742 kb on + strand, within ABID97_RS10015at 2081.745 kb on + strand, within ABID97_RS10015at 2081.746 kb on - strand, within ABID97_RS10015at 2082.018 kb on + strand, within ABID97_RS10015at 2082.019 kb on - strand, within ABID97_RS10015

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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2,078,744 - ABID97_RS10000 0.50 +0.9
2,078,744 - ABID97_RS10000 0.50 -0.8
2,078,806 + ABID97_RS10000 0.56 +0.3
2,078,806 + ABID97_RS10000 0.56 +0.3
2,078,806 + ABID97_RS10000 0.56 -0.0
2,078,807 - ABID97_RS10000 0.56 -0.7
2,078,807 - ABID97_RS10000 0.56 -0.1
2,079,017 - ABID97_RS10000 0.79 +0.1
2,079,017 - ABID97_RS10000 0.79 +0.1
2,079,017 - ABID97_RS10000 0.79 -0.4
2,079,017 - ABID97_RS10000 0.79 -0.0
2,079,534 + +0.4
2,079,664 - +0.5
2,079,788 - +0.8
2,079,877 + ABID97_RS10010 0.13 -0.3
2,080,003 + ABID97_RS10010 0.22 -0.3
2,080,003 + ABID97_RS10010 0.22 -0.4
2,080,003 + ABID97_RS10010 0.22 -0.2
2,080,004 - ABID97_RS10010 0.22 -0.6
2,080,004 - ABID97_RS10010 0.22 -2.0
2,080,004 - ABID97_RS10010 0.22 +0.5
2,080,004 - ABID97_RS10010 0.22 +0.5
2,080,294 + ABID97_RS10010 0.41 -0.7
2,080,330 + ABID97_RS10010 0.43 +0.2
2,080,367 - ABID97_RS10010 0.46 -1.7
2,080,626 + ABID97_RS10010 0.63 +0.0
2,080,627 - ABID97_RS10010 0.63 -0.1
2,080,627 - ABID97_RS10010 0.63 +0.0
2,080,957 + ABID97_RS10010 0.85 +0.4
2,080,957 + ABID97_RS10010 0.85 -1.1
2,080,957 + ABID97_RS10010 0.85 +0.2
2,080,987 + ABID97_RS10010 0.87 +1.1
2,080,988 - ABID97_RS10010 0.87 +0.4
2,081,581 - ABID97_RS10015 0.26 +0.8
2,081,742 + ABID97_RS10015 0.37 -1.3
2,081,742 + ABID97_RS10015 0.37 +0.1
2,081,745 + ABID97_RS10015 0.37 +0.3
2,081,746 - ABID97_RS10015 0.37 -0.5
2,082,018 + ABID97_RS10015 0.54 -0.5
2,082,019 - ABID97_RS10015 0.54 +0.3

Or see this region's nucleotide sequence