Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01440 and ABID97_RS01445 are separated by 5 nucleotides ABID97_RS01445 and ABID97_RS01450 overlap by 4 nucleotides ABID97_RS01450 and ABID97_RS01455 are separated by 86 nucleotides
ABID97_RS01440: ABID97_RS01440 - acyl-CoA dehydrogenase family protein, at 291,320 to 292,513
_RS01440
ABID97_RS01445: ABID97_RS01445 - AMP-binding protein, at 292,519 to 294,144
_RS01445
ABID97_RS01450: ABID97_RS01450 - RidA family protein, at 294,141 to 294,539
_RS01450
ABID97_RS01455: ABID97_RS01455 - AacA4 family aminoglycoside N(6')-acetyltransferase, at 294,626 to 295,183
_RS01455
Position (kb) 292
293
294
295 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 291.680 kb on + strand, within ABID97_RS01440 at 291.680 kb on + strand, within ABID97_RS01440 at 291.680 kb on + strand, within ABID97_RS01440 at 291.848 kb on + strand, within ABID97_RS01440 at 291.849 kb on - strand, within ABID97_RS01440 at 291.849 kb on - strand, within ABID97_RS01440 at 291.849 kb on - strand, within ABID97_RS01440 at 291.849 kb on - strand, within ABID97_RS01440 at 292.245 kb on - strand, within ABID97_RS01440 at 292.245 kb on - strand, within ABID97_RS01440 at 292.427 kb on + strand at 292.454 kb on + strand at 292.454 kb on + strand at 292.454 kb on + strand at 292.455 kb on - strand at 292.455 kb on - strand at 292.455 kb on - strand at 292.455 kb on - strand at 292.455 kb on - strand at 292.455 kb on - strand at 292.511 kb on + strand at 293.282 kb on + strand, within ABID97_RS01445 at 293.312 kb on - strand, within ABID97_RS01445 at 293.312 kb on - strand, within ABID97_RS01445 at 293.312 kb on - strand, within ABID97_RS01445 at 293.383 kb on + strand, within ABID97_RS01445 at 293.563 kb on + strand, within ABID97_RS01445 at 293.564 kb on - strand, within ABID97_RS01445 at 293.740 kb on + strand, within ABID97_RS01445 at 293.740 kb on + strand, within ABID97_RS01445 at 293.761 kb on + strand, within ABID97_RS01445 at 293.797 kb on + strand, within ABID97_RS01445 at 293.797 kb on + strand, within ABID97_RS01445 at 293.806 kb on + strand, within ABID97_RS01445 at 293.846 kb on - strand, within ABID97_RS01445 at 293.846 kb on - strand, within ABID97_RS01445 at 294.678 kb on + strand at 294.678 kb on + strand at 294.678 kb on + strand at 294.678 kb on + strand at 294.679 kb on - strand at 294.679 kb on - strand at 294.679 kb on - strand at 294.679 kb on - strand at 294.679 kb on - strand at 294.679 kb on - strand at 294.738 kb on + strand, within ABID97_RS01455 at 294.951 kb on + strand, within ABID97_RS01455 at 294.951 kb on + strand, within ABID97_RS01455 at 294.952 kb on - strand, within ABID97_RS01455 at 294.952 kb on - strand, within ABID97_RS01455 at 294.952 kb on - strand, within ABID97_RS01455 at 294.996 kb on + strand, within ABID97_RS01455 at 294.996 kb on + strand, within ABID97_RS01455 at 294.997 kb on - strand, within ABID97_RS01455 at 295.035 kb on + strand, within ABID97_RS01455 at 295.035 kb on + strand, within ABID97_RS01455 at 295.035 kb on + strand, within ABID97_RS01455 at 295.035 kb on + strand, within ABID97_RS01455 at 295.036 kb on - strand, within ABID97_RS01455 at 295.036 kb on - strand, within ABID97_RS01455 at 295.036 kb on - strand, within ABID97_RS01455 at 295.060 kb on + strand, within ABID97_RS01455 at 295.061 kb on - strand, within ABID97_RS01455 at 295.126 kb on + strand, within ABID97_RS01455 at 295.126 kb on + strand, within ABID97_RS01455 at 295.126 kb on + strand, within ABID97_RS01455 at 295.126 kb on + strand, within ABID97_RS01455 at 295.126 kb on + strand, within ABID97_RS01455 at 295.127 kb on - strand, within ABID97_RS01455 at 295.127 kb on - strand, within ABID97_RS01455 at 295.127 kb on - strand, within ABID97_RS01455 at 295.127 kb on - strand, within ABID97_RS01455
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 291,680 + ABID97_RS01440 0.30 -3.3 291,680 + ABID97_RS01440 0.30 -3.5 291,680 + ABID97_RS01440 0.30 -3.6 291,848 + ABID97_RS01440 0.44 -1.8 291,849 - ABID97_RS01440 0.44 -3.7 291,849 - ABID97_RS01440 0.44 -2.6 291,849 - ABID97_RS01440 0.44 -3.6 291,849 - ABID97_RS01440 0.44 -2.5 292,245 - ABID97_RS01440 0.77 -2.8 292,245 - ABID97_RS01440 0.77 -1.8 292,427 + -2.4 292,454 + -3.5 292,454 + -2.7 292,454 + -3.0 292,455 - -3.7 292,455 - -3.8 292,455 - -3.1 292,455 - -3.7 292,455 - -3.8 292,455 - -1.9 292,511 + -1.3 293,282 + ABID97_RS01445 0.47 -3.7 293,312 - ABID97_RS01445 0.49 -2.0 293,312 - ABID97_RS01445 0.49 -3.5 293,312 - ABID97_RS01445 0.49 -2.7 293,383 + ABID97_RS01445 0.53 -2.5 293,563 + ABID97_RS01445 0.64 -2.9 293,564 - ABID97_RS01445 0.64 -2.2 293,740 + ABID97_RS01445 0.75 -4.0 293,740 + ABID97_RS01445 0.75 -2.4 293,761 + ABID97_RS01445 0.76 -1.7 293,797 + ABID97_RS01445 0.79 -2.2 293,797 + ABID97_RS01445 0.79 -2.0 293,806 + ABID97_RS01445 0.79 -2.2 293,846 - ABID97_RS01445 0.82 -2.8 293,846 - ABID97_RS01445 0.82 +1.8 294,678 + -0.2 294,678 + +0.5 294,678 + +1.8 294,678 + +0.3 294,679 - -0.3 294,679 - +0.5 294,679 - +0.7 294,679 - +1.4 294,679 - +1.2 294,679 - +0.6 294,738 + ABID97_RS01455 0.20 +0.7 294,951 + ABID97_RS01455 0.58 +0.5 294,951 + ABID97_RS01455 0.58 +0.1 294,952 - ABID97_RS01455 0.58 +0.6 294,952 - ABID97_RS01455 0.58 +1.1 294,952 - ABID97_RS01455 0.58 +0.9 294,996 + ABID97_RS01455 0.66 +0.5 294,996 + ABID97_RS01455 0.66 +0.6 294,997 - ABID97_RS01455 0.66 +0.6 295,035 + ABID97_RS01455 0.73 +0.5 295,035 + ABID97_RS01455 0.73 +0.6 295,035 + ABID97_RS01455 0.73 +0.9 295,035 + ABID97_RS01455 0.73 +0.2 295,036 - ABID97_RS01455 0.73 +1.3 295,036 - ABID97_RS01455 0.73 +0.5 295,036 - ABID97_RS01455 0.73 +0.5 295,060 + ABID97_RS01455 0.78 +1.4 295,061 - ABID97_RS01455 0.78 +0.5 295,126 + ABID97_RS01455 0.90 +0.7 295,126 + ABID97_RS01455 0.90 +0.6 295,126 + ABID97_RS01455 0.90 +0.6 295,126 + ABID97_RS01455 0.90 +0.8 295,126 + ABID97_RS01455 0.90 +1.8 295,127 - ABID97_RS01455 0.90 +0.7 295,127 - ABID97_RS01455 0.90 +0.5 295,127 - ABID97_RS01455 0.90 +0.7 295,127 - ABID97_RS01455 0.90 +0.4
Or see this region's nucleotide sequence