Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS08230 and RPSI07_RS08235 are separated by 14 nucleotides RPSI07_RS08235 and RPSI07_RS08240 are separated by 21 nucleotides RPSI07_RS08240 and RPSI07_RS08245 are separated by 227 nucleotides
RPSI07_RS08230: RPSI07_RS08230 - bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase, at 87,463 to 89,526
_RS08230
RPSI07_RS08235: RPSI07_RS08235 - sel1 repeat family protein, at 89,541 to 90,371
_RS08235
RPSI07_RS08240: RPSI07_RS08240 - 2-dehydropantoate 2-reductase, at 90,393 to 91,370
_RS08240
RPSI07_RS08245: RPSI07_RS08245 - DUF2272 domain-containing protein, at 91,598 to 92,551
_RS08245
Position (kb) 90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 89.524 kb on + strand at 89.524 kb on + strand at 89.524 kb on + strand at 89.525 kb on - strand at 89.525 kb on - strand at 89.525 kb on - strand at 89.525 kb on - strand at 90.036 kb on + strand, within RPSI07_RS08235 at 90.037 kb on - strand, within RPSI07_RS08235 at 90.039 kb on + strand, within RPSI07_RS08235 at 90.039 kb on + strand, within RPSI07_RS08235 at 90.040 kb on - strand, within RPSI07_RS08235 at 90.055 kb on - strand, within RPSI07_RS08235 at 90.213 kb on + strand, within RPSI07_RS08235 at 90.214 kb on - strand, within RPSI07_RS08235 at 90.214 kb on - strand, within RPSI07_RS08235 at 90.214 kb on - strand, within RPSI07_RS08235 at 90.270 kb on + strand, within RPSI07_RS08235 at 90.270 kb on + strand, within RPSI07_RS08235 at 90.270 kb on + strand, within RPSI07_RS08235 at 90.271 kb on - strand, within RPSI07_RS08235 at 90.369 kb on + strand at 90.369 kb on + strand at 90.370 kb on - strand at 90.370 kb on - strand at 90.398 kb on - strand at 90.590 kb on + strand, within RPSI07_RS08240 at 90.591 kb on - strand, within RPSI07_RS08240 at 91.074 kb on + strand, within RPSI07_RS08240 at 91.424 kb on - strand at 91.424 kb on - strand at 91.478 kb on + strand at 91.541 kb on + strand at 91.541 kb on + strand at 91.542 kb on - strand at 91.542 kb on - strand at 91.542 kb on - strand at 91.542 kb on - strand at 91.542 kb on - strand at 91.648 kb on + strand at 91.648 kb on + strand at 91.648 kb on + strand at 91.648 kb on + strand at 91.648 kb on + strand at 91.649 kb on - strand at 91.649 kb on - strand at 91.649 kb on - strand at 91.649 kb on - strand at 91.651 kb on - strand at 91.651 kb on - strand at 91.932 kb on + strand, within RPSI07_RS08245 at 91.932 kb on + strand, within RPSI07_RS08245 at 91.933 kb on - strand, within RPSI07_RS08245 at 91.933 kb on - strand, within RPSI07_RS08245 at 91.933 kb on - strand, within RPSI07_RS08245 at 91.933 kb on - strand, within RPSI07_RS08245 at 92.076 kb on + strand, within RPSI07_RS08245 at 92.310 kb on + strand, within RPSI07_RS08245 at 92.310 kb on + strand, within RPSI07_RS08245 at 92.310 kb on + strand, within RPSI07_RS08245 at 92.310 kb on + strand, within RPSI07_RS08245
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 89,524 + +0.1 89,524 + +0.2 89,524 + -0.1 89,525 - -1.3 89,525 - +0.6 89,525 - -2.1 89,525 - +0.9 90,036 + RPSI07_RS08235 0.60 -0.5 90,037 - RPSI07_RS08235 0.60 -0.8 90,039 + RPSI07_RS08235 0.60 +0.4 90,039 + RPSI07_RS08235 0.60 -1.9 90,040 - RPSI07_RS08235 0.60 -0.7 90,055 - RPSI07_RS08235 0.62 +0.4 90,213 + RPSI07_RS08235 0.81 +1.2 90,214 - RPSI07_RS08235 0.81 -0.9 90,214 - RPSI07_RS08235 0.81 +0.6 90,214 - RPSI07_RS08235 0.81 +0.4 90,270 + RPSI07_RS08235 0.88 -0.2 90,270 + RPSI07_RS08235 0.88 -0.9 90,270 + RPSI07_RS08235 0.88 -0.1 90,271 - RPSI07_RS08235 0.88 +0.1 90,369 + +0.4 90,369 + +3.4 90,370 - -0.6 90,370 - -0.6 90,398 - -0.3 90,590 + RPSI07_RS08240 0.20 +0.5 90,591 - RPSI07_RS08240 0.20 -0.6 91,074 + RPSI07_RS08240 0.70 -0.1 91,424 - +1.3 91,424 - -0.4 91,478 + -0.6 91,541 + -0.3 91,541 + -0.1 91,542 - -0.2 91,542 - -0.6 91,542 - +1.0 91,542 - -0.3 91,542 - +1.6 91,648 + +0.8 91,648 + -3.2 91,648 + +1.4 91,648 + +0.4 91,648 + -1.0 91,649 - +1.5 91,649 - -0.7 91,649 - +0.7 91,649 - -0.7 91,651 - -0.5 91,651 - -1.2 91,932 + RPSI07_RS08245 0.35 +0.1 91,932 + RPSI07_RS08245 0.35 +1.4 91,933 - RPSI07_RS08245 0.35 -1.0 91,933 - RPSI07_RS08245 0.35 +0.4 91,933 - RPSI07_RS08245 0.35 -1.6 91,933 - RPSI07_RS08245 0.35 -2.9 92,076 + RPSI07_RS08245 0.50 -0.0 92,310 + RPSI07_RS08245 0.75 -0.6 92,310 + RPSI07_RS08245 0.75 -0.6 92,310 + RPSI07_RS08245 0.75 -0.2 92,310 + RPSI07_RS08245 0.75 +0.3
Or see this region's nucleotide sequence