Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20475 and ABIE41_RS20480 are separated by 86 nucleotides ABIE41_RS20480 and ABIE41_RS20485 are separated by 9 nucleotides
ABIE41_RS20475: ABIE41_RS20475 - ROK family protein, at 4,209,021 to 4,210,241
_RS20475
ABIE41_RS20480: ABIE41_RS20480 - glucosamine-6-phosphate deaminase, at 4,210,328 to 4,211,071
_RS20480
ABIE41_RS20485: ABIE41_RS20485 - amidohydrolase family protein, at 4,211,081 to 4,212,151
_RS20485
Position (kb) 4210
4211
4212 Strain fitness (log2 ratio) -1
0
1 at 4210.538 kb on + strand, within ABIE41_RS20480 at 4210.538 kb on + strand, within ABIE41_RS20480 at 4210.539 kb on - strand, within ABIE41_RS20480 at 4210.539 kb on - strand, within ABIE41_RS20480 at 4210.784 kb on + strand, within ABIE41_RS20480 at 4210.784 kb on + strand, within ABIE41_RS20480 at 4210.784 kb on + strand, within ABIE41_RS20480 at 4210.785 kb on - strand, within ABIE41_RS20480 at 4210.785 kb on - strand, within ABIE41_RS20480 at 4210.785 kb on - strand, within ABIE41_RS20480 at 4211.321 kb on + strand, within ABIE41_RS20485 at 4211.321 kb on + strand, within ABIE41_RS20485 at 4211.322 kb on - strand, within ABIE41_RS20485 at 4211.360 kb on + strand, within ABIE41_RS20485 at 4211.536 kb on + strand, within ABIE41_RS20485 at 4211.536 kb on + strand, within ABIE41_RS20485 at 4211.536 kb on + strand, within ABIE41_RS20485 at 4211.537 kb on - strand, within ABIE41_RS20485 at 4211.537 kb on - strand, within ABIE41_RS20485 at 4211.537 kb on - strand, within ABIE41_RS20485 at 4211.807 kb on + strand, within ABIE41_RS20485
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 4,210,538 + ABIE41_RS20480 0.28 +0.2 4,210,538 + ABIE41_RS20480 0.28 +0.5 4,210,539 - ABIE41_RS20480 0.28 +1.2 4,210,539 - ABIE41_RS20480 0.28 -0.1 4,210,784 + ABIE41_RS20480 0.61 -0.5 4,210,784 + ABIE41_RS20480 0.61 +1.4 4,210,784 + ABIE41_RS20480 0.61 +0.1 4,210,785 - ABIE41_RS20480 0.61 -0.4 4,210,785 - ABIE41_RS20480 0.61 +0.3 4,210,785 - ABIE41_RS20480 0.61 -0.6 4,211,321 + ABIE41_RS20485 0.22 -0.0 4,211,321 + ABIE41_RS20485 0.22 +0.2 4,211,322 - ABIE41_RS20485 0.23 +1.2 4,211,360 + ABIE41_RS20485 0.26 -0.4 4,211,536 + ABIE41_RS20485 0.42 -0.0 4,211,536 + ABIE41_RS20485 0.42 +0.0 4,211,536 + ABIE41_RS20485 0.42 +0.1 4,211,537 - ABIE41_RS20485 0.43 +1.7 4,211,537 - ABIE41_RS20485 0.43 -0.3 4,211,537 - ABIE41_RS20485 0.43 +1.0 4,211,807 + ABIE41_RS20485 0.68 +1.1
Or see this region's nucleotide sequence