Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12640

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS12635 and ABIE41_RS12640 are separated by 141 nucleotidesABIE41_RS12640 and ABIE41_RS12645 are separated by 58 nucleotides ABIE41_RS12635: ABIE41_RS12635 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 2,591,136 to 2,592,083 _RS12635 ABIE41_RS12640: ABIE41_RS12640 - outer membrane protein assembly factor BamD, at 2,592,225 to 2,593,166 _RS12640 ABIE41_RS12645: ABIE41_RS12645 - DNA repair protein RecN, at 2,593,225 to 2,594,910 _RS12645 Position (kb) 2592 2593 2594Strain fitness (log2 ratio) -1 0 1at 2592.129 kb on + strandat 2593.873 kb on - strand, within ABIE41_RS12645at 2593.873 kb on - strand, within ABIE41_RS12645at 2594.098 kb on + strand, within ABIE41_RS12645at 2594.098 kb on + strand, within ABIE41_RS12645at 2594.098 kb on + strand, within ABIE41_RS12645at 2594.164 kb on + strand, within ABIE41_RS12645at 2594.164 kb on + strand, within ABIE41_RS12645at 2594.164 kb on + strand, within ABIE41_RS12645at 2594.165 kb on - strand, within ABIE41_RS12645

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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2,592,129 + -0.1
2,593,873 - ABIE41_RS12645 0.38 -1.3
2,593,873 - ABIE41_RS12645 0.38 -0.3
2,594,098 + ABIE41_RS12645 0.52 -0.8
2,594,098 + ABIE41_RS12645 0.52 +0.6
2,594,098 + ABIE41_RS12645 0.52 +0.5
2,594,164 + ABIE41_RS12645 0.56 -1.0
2,594,164 + ABIE41_RS12645 0.56 -0.8
2,594,164 + ABIE41_RS12645 0.56 -0.5
2,594,165 - ABIE41_RS12645 0.56 -1.0

Or see this region's nucleotide sequence