Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02680 and ABIE41_RS02685 are separated by 7 nucleotides ABIE41_RS02685 and ABIE41_RS02690 are separated by 109 nucleotides ABIE41_RS02690 and ABIE41_RS02695 are separated by 60 nucleotides ABIE41_RS02695 and ABIE41_RS02700 are separated by 192 nucleotides
ABIE41_RS02680: ABIE41_RS02680 - sensor histidine kinase, at 542,807 to 544,606
_RS02680
ABIE41_RS02685: ABIE41_RS02685 - HPr kinase/phosphatase C-terminal domain-containing protein, at 544,614 to 545,057
_RS02685
ABIE41_RS02690: ABIE41_RS02690 - PTS sugar transporter subunit IIA, at 545,167 to 545,568
_RS02690
ABIE41_RS02695: ABIE41_RS02695 - HPr family phosphocarrier protein, at 545,629 to 545,910
_RS02695
ABIE41_RS02700: ABIE41_RS02700 - adenosylhomocysteinase, at 546,103 to 547,545
_RS02700
Position (kb) 545
546 Strain fitness (log2 ratio) -2
-1
0
1 at 545.096 kb on + strand at 545.096 kb on + strand at 545.096 kb on + strand at 545.096 kb on + strand at 545.097 kb on - strand at 545.161 kb on + strand at 545.530 kb on + strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.566 kb on + strand at 545.566 kb on + strand at 545.909 kb on - strand at 545.909 kb on - strand at 545.909 kb on - strand at 545.909 kb on - strand at 545.909 kb on - strand at 546.068 kb on + strand at 546.069 kb on - strand at 546.069 kb on - strand at 546.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 545,096 + -0.4 545,096 + -0.0 545,096 + +0.7 545,096 + -0.6 545,097 - -1.3 545,161 + +0.3 545,530 + -1.9 545,531 - -1.1 545,531 - -0.7 545,531 - -0.5 545,531 - -1.4 545,531 - -0.8 545,531 - -1.6 545,531 - -0.5 545,531 - -1.7 545,531 - -0.8 545,566 + -0.2 545,566 + +0.3 545,909 - +0.8 545,909 - -0.6 545,909 - -0.2 545,909 - +0.5 545,909 - +0.4 546,068 + -0.6 546,069 - -0.0 546,069 - -0.7 546,069 - -0.8
Or see this region's nucleotide sequence