Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS00050 and ABIE41_RS00055 are separated by 82 nucleotides ABIE41_RS00055 and ABIE41_RS00060 are separated by 13 nucleotides ABIE41_RS00060 and ABIE41_RS00065 are separated by 46 nucleotides ABIE41_RS00065 and ABIE41_RS00070 overlap by 4 nucleotides ABIE41_RS00070 and ABIE41_RS00075 are separated by 53 nucleotides
ABIE41_RS00050: ABIE41_RS00050 - orotidine-5'-phosphate decarboxylase, at 7,701 to 8,408
_RS00050
ABIE41_RS00055: ABIE41_RS00055 - DsbA family oxidoreductase, at 8,491 to 9,135
_RS00055
ABIE41_RS00060: ABIE41_RS00060 - type II toxin-antitoxin system VapC family toxin, at 9,149 to 9,313
_RS00060
ABIE41_RS00065: ABIE41_RS00065 - type II toxin-antitoxin system VapC family toxin, at 9,360 to 9,536
_RS00065
ABIE41_RS00070: ABIE41_RS00070 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 9,533 to 9,778
_RS00070
ABIE41_RS00075: ABIE41_RS00075 - lysine-2,3-aminomutase-like protein, at 9,832 to 10,899
_RS00075
Position (kb) 9
10 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 8.296 kb on + strand, within ABIE41_RS00050 at 8.296 kb on + strand, within ABIE41_RS00050 at 8.297 kb on - strand, within ABIE41_RS00050 at 8.297 kb on - strand, within ABIE41_RS00050 at 8.355 kb on + strand at 8.355 kb on + strand at 8.356 kb on - strand at 8.356 kb on - strand at 8.756 kb on + strand, within ABIE41_RS00055 at 8.757 kb on - strand, within ABIE41_RS00055 at 8.757 kb on - strand, within ABIE41_RS00055 at 8.757 kb on - strand, within ABIE41_RS00055 at 8.823 kb on + strand, within ABIE41_RS00055 at 8.823 kb on + strand, within ABIE41_RS00055 at 8.824 kb on - strand, within ABIE41_RS00055 at 8.954 kb on + strand, within ABIE41_RS00055 at 9.002 kb on + strand, within ABIE41_RS00055 at 9.003 kb on - strand, within ABIE41_RS00055 at 9.003 kb on - strand, within ABIE41_RS00055 at 9.003 kb on - strand, within ABIE41_RS00055 at 9.079 kb on - strand at 9.079 kb on - strand at 9.079 kb on - strand at 9.174 kb on + strand, within ABIE41_RS00060 at 9.260 kb on - strand, within ABIE41_RS00060 at 9.426 kb on - strand, within ABIE41_RS00065 at 9.430 kb on + strand, within ABIE41_RS00065 at 9.430 kb on + strand, within ABIE41_RS00065 at 9.430 kb on + strand, within ABIE41_RS00065 at 9.430 kb on + strand, within ABIE41_RS00065 at 9.431 kb on - strand, within ABIE41_RS00065 at 9.431 kb on - strand, within ABIE41_RS00065 at 9.431 kb on - strand, within ABIE41_RS00065 at 9.616 kb on + strand, within ABIE41_RS00070 at 9.616 kb on + strand, within ABIE41_RS00070 at 9.616 kb on + strand, within ABIE41_RS00070 at 9.616 kb on + strand, within ABIE41_RS00070 at 9.617 kb on - strand, within ABIE41_RS00070 at 9.617 kb on - strand, within ABIE41_RS00070 at 9.793 kb on + strand at 9.793 kb on + strand at 9.794 kb on - strand at 9.794 kb on - strand at 9.807 kb on + strand at 9.807 kb on + strand at 9.807 kb on + strand at 9.808 kb on - strand at 9.813 kb on - strand at 9.845 kb on + strand at 9.964 kb on - strand, within ABIE41_RS00075 at 9.965 kb on + strand, within ABIE41_RS00075 at 9.965 kb on + strand, within ABIE41_RS00075 at 9.965 kb on + strand, within ABIE41_RS00075 at 9.965 kb on + strand, within ABIE41_RS00075 at 9.965 kb on + strand, within ABIE41_RS00075 at 9.965 kb on + strand, within ABIE41_RS00075 at 9.965 kb on + strand, within ABIE41_RS00075 at 9.965 kb on + strand, within ABIE41_RS00075 at 9.966 kb on - strand, within ABIE41_RS00075 at 9.966 kb on - strand, within ABIE41_RS00075 at 9.966 kb on - strand, within ABIE41_RS00075 at 9.966 kb on - strand, within ABIE41_RS00075 at 9.966 kb on - strand, within ABIE41_RS00075 at 9.966 kb on - strand, within ABIE41_RS00075 at 9.966 kb on - strand, within ABIE41_RS00075 at 9.966 kb on - strand, within ABIE41_RS00075 at 9.966 kb on - strand, within ABIE41_RS00075 at 10.082 kb on + strand, within ABIE41_RS00075 at 10.082 kb on + strand, within ABIE41_RS00075 at 10.082 kb on + strand, within ABIE41_RS00075 at 10.082 kb on + strand, within ABIE41_RS00075 at 10.083 kb on - strand, within ABIE41_RS00075 at 10.086 kb on - strand, within ABIE41_RS00075 at 10.086 kb on - strand, within ABIE41_RS00075 at 10.086 kb on - strand, within ABIE41_RS00075 at 10.086 kb on - strand, within ABIE41_RS00075 at 10.268 kb on + strand, within ABIE41_RS00075 at 10.269 kb on - strand, within ABIE41_RS00075 at 10.269 kb on - strand, within ABIE41_RS00075 at 10.269 kb on - strand, within ABIE41_RS00075 at 10.269 kb on - strand, within ABIE41_RS00075 at 10.305 kb on - strand, within ABIE41_RS00075
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 8,296 + ABIE41_RS00050 0.84 -0.5 8,296 + ABIE41_RS00050 0.84 -0.7 8,297 - ABIE41_RS00050 0.84 -0.3 8,297 - ABIE41_RS00050 0.84 -2.9 8,355 + -1.6 8,355 + -2.8 8,356 - -3.2 8,356 - -2.5 8,756 + ABIE41_RS00055 0.41 -0.7 8,757 - ABIE41_RS00055 0.41 -0.0 8,757 - ABIE41_RS00055 0.41 -0.6 8,757 - ABIE41_RS00055 0.41 +0.0 8,823 + ABIE41_RS00055 0.51 -0.5 8,823 + ABIE41_RS00055 0.51 +0.4 8,824 - ABIE41_RS00055 0.52 +0.2 8,954 + ABIE41_RS00055 0.72 +0.4 9,002 + ABIE41_RS00055 0.79 -0.2 9,003 - ABIE41_RS00055 0.79 +0.1 9,003 - ABIE41_RS00055 0.79 +0.3 9,003 - ABIE41_RS00055 0.79 -0.4 9,079 - -0.2 9,079 - -0.8 9,079 - +1.5 9,174 + ABIE41_RS00060 0.15 -1.3 9,260 - ABIE41_RS00060 0.67 +0.2 9,426 - ABIE41_RS00065 0.37 +1.0 9,430 + ABIE41_RS00065 0.40 -1.0 9,430 + ABIE41_RS00065 0.40 -0.1 9,430 + ABIE41_RS00065 0.40 +0.1 9,430 + ABIE41_RS00065 0.40 +0.3 9,431 - ABIE41_RS00065 0.40 -0.5 9,431 - ABIE41_RS00065 0.40 -0.4 9,431 - ABIE41_RS00065 0.40 -0.4 9,616 + ABIE41_RS00070 0.34 -0.1 9,616 + ABIE41_RS00070 0.34 +0.4 9,616 + ABIE41_RS00070 0.34 +0.1 9,616 + ABIE41_RS00070 0.34 -1.0 9,617 - ABIE41_RS00070 0.34 -1.9 9,617 - ABIE41_RS00070 0.34 -0.0 9,793 + -1.1 9,793 + -0.7 9,794 - -0.2 9,794 - -0.1 9,807 + +0.4 9,807 + -0.3 9,807 + +0.0 9,808 - +1.9 9,813 - +0.5 9,845 + +0.5 9,964 - ABIE41_RS00075 0.12 +0.8 9,965 + ABIE41_RS00075 0.12 -0.1 9,965 + ABIE41_RS00075 0.12 -0.8 9,965 + ABIE41_RS00075 0.12 +0.1 9,965 + ABIE41_RS00075 0.12 +0.6 9,965 + ABIE41_RS00075 0.12 -0.3 9,965 + ABIE41_RS00075 0.12 -0.4 9,965 + ABIE41_RS00075 0.12 -1.2 9,965 + ABIE41_RS00075 0.12 +0.1 9,966 - ABIE41_RS00075 0.13 +1.5 9,966 - ABIE41_RS00075 0.13 +0.9 9,966 - ABIE41_RS00075 0.13 +0.7 9,966 - ABIE41_RS00075 0.13 +0.2 9,966 - ABIE41_RS00075 0.13 +0.5 9,966 - ABIE41_RS00075 0.13 -0.1 9,966 - ABIE41_RS00075 0.13 -0.0 9,966 - ABIE41_RS00075 0.13 +0.4 9,966 - ABIE41_RS00075 0.13 +0.5 10,082 + ABIE41_RS00075 0.23 +0.5 10,082 + ABIE41_RS00075 0.23 -0.3 10,082 + ABIE41_RS00075 0.23 -0.9 10,082 + ABIE41_RS00075 0.23 +0.1 10,083 - ABIE41_RS00075 0.24 -1.0 10,086 - ABIE41_RS00075 0.24 -0.0 10,086 - ABIE41_RS00075 0.24 +0.1 10,086 - ABIE41_RS00075 0.24 -1.9 10,086 - ABIE41_RS00075 0.24 -0.7 10,268 + ABIE41_RS00075 0.41 -0.5 10,269 - ABIE41_RS00075 0.41 +0.5 10,269 - ABIE41_RS00075 0.41 -2.0 10,269 - ABIE41_RS00075 0.41 -0.1 10,269 - ABIE41_RS00075 0.41 +0.2 10,305 - ABIE41_RS00075 0.44 +0.2
Or see this region's nucleotide sequence