Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19975

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19965 and ABIE40_RS19970 overlap by 8 nucleotidesABIE40_RS19970 and ABIE40_RS19975 are separated by 11 nucleotidesABIE40_RS19975 and ABIE40_RS19980 are separated by 16 nucleotides ABIE40_RS19965: ABIE40_RS19965 - Gfo/Idh/MocA family oxidoreductase, at 92,789 to 93,868 _RS19965 ABIE40_RS19970: ABIE40_RS19970 - L-rhamnose mutarotase, at 93,861 to 94,190 _RS19970 ABIE40_RS19975: ABIE40_RS19975 - mandelate racemase/muconate lactonizing enzyme family protein, at 94,202 to 95,314 _RS19975 ABIE40_RS19980: ABIE40_RS19980 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 95,331 to 96,428 _RS19980 Position (kb) 94 95 96Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 93.232 kb on + strand, within ABIE40_RS19965at 93.232 kb on + strand, within ABIE40_RS19965at 93.233 kb on - strand, within ABIE40_RS19965at 93.233 kb on - strand, within ABIE40_RS19965at 93.288 kb on + strand, within ABIE40_RS19965at 93.288 kb on + strand, within ABIE40_RS19965at 93.289 kb on - strand, within ABIE40_RS19965at 93.289 kb on - strand, within ABIE40_RS19965at 93.289 kb on - strand, within ABIE40_RS19965at 93.436 kb on + strand, within ABIE40_RS19965at 93.437 kb on - strand, within ABIE40_RS19965at 93.437 kb on - strand, within ABIE40_RS19965at 93.437 kb on - strand, within ABIE40_RS19965at 93.437 kb on - strand, within ABIE40_RS19965at 93.750 kb on + strand, within ABIE40_RS19965at 94.016 kb on + strand, within ABIE40_RS19970at 94.017 kb on - strand, within ABIE40_RS19970at 94.018 kb on + strand, within ABIE40_RS19970at 94.019 kb on - strand, within ABIE40_RS19970at 94.069 kb on + strand, within ABIE40_RS19970at 94.069 kb on + strand, within ABIE40_RS19970at 94.070 kb on - strand, within ABIE40_RS19970at 94.070 kb on - strand, within ABIE40_RS19970at 94.124 kb on + strand, within ABIE40_RS19970at 94.139 kb on - strand, within ABIE40_RS19970at 94.139 kb on - strand, within ABIE40_RS19970at 94.356 kb on + strand, within ABIE40_RS19975at 94.356 kb on + strand, within ABIE40_RS19975at 94.357 kb on - strand, within ABIE40_RS19975at 94.365 kb on + strand, within ABIE40_RS19975at 94.366 kb on - strand, within ABIE40_RS19975at 94.366 kb on - strand, within ABIE40_RS19975at 94.366 kb on - strand, within ABIE40_RS19975at 94.477 kb on + strand, within ABIE40_RS19975at 94.534 kb on + strand, within ABIE40_RS19975at 94.534 kb on + strand, within ABIE40_RS19975at 94.534 kb on + strand, within ABIE40_RS19975at 94.535 kb on - strand, within ABIE40_RS19975at 94.535 kb on - strand, within ABIE40_RS19975at 94.535 kb on - strand, within ABIE40_RS19975at 94.535 kb on - strand, within ABIE40_RS19975at 94.535 kb on - strand, within ABIE40_RS19975at 94.535 kb on - strand, within ABIE40_RS19975at 94.535 kb on - strand, within ABIE40_RS19975at 94.535 kb on - strand, within ABIE40_RS19975at 94.535 kb on - strand, within ABIE40_RS19975at 94.535 kb on - strand, within ABIE40_RS19975at 94.536 kb on + strand, within ABIE40_RS19975at 94.536 kb on + strand, within ABIE40_RS19975at 94.536 kb on + strand, within ABIE40_RS19975at 94.537 kb on - strand, within ABIE40_RS19975at 94.537 kb on - strand, within ABIE40_RS19975at 94.537 kb on - strand, within ABIE40_RS19975at 94.537 kb on - strand, within ABIE40_RS19975at 94.537 kb on - strand, within ABIE40_RS19975at 94.537 kb on - strand, within ABIE40_RS19975at 94.537 kb on - strand, within ABIE40_RS19975at 94.561 kb on - strand, within ABIE40_RS19975at 94.612 kb on + strand, within ABIE40_RS19975at 94.612 kb on + strand, within ABIE40_RS19975at 94.613 kb on - strand, within ABIE40_RS19975at 94.782 kb on + strand, within ABIE40_RS19975at 94.782 kb on + strand, within ABIE40_RS19975at 94.782 kb on + strand, within ABIE40_RS19975at 94.782 kb on + strand, within ABIE40_RS19975at 94.782 kb on + strand, within ABIE40_RS19975at 94.783 kb on - strand, within ABIE40_RS19975at 94.783 kb on - strand, within ABIE40_RS19975at 94.783 kb on - strand, within ABIE40_RS19975at 94.783 kb on - strand, within ABIE40_RS19975at 94.883 kb on - strand, within ABIE40_RS19975at 94.908 kb on + strand, within ABIE40_RS19975at 94.909 kb on - strand, within ABIE40_RS19975at 94.909 kb on - strand, within ABIE40_RS19975at 94.909 kb on - strand, within ABIE40_RS19975at 94.909 kb on - strand, within ABIE40_RS19975at 94.909 kb on - strand, within ABIE40_RS19975at 94.921 kb on + strand, within ABIE40_RS19975at 94.921 kb on + strand, within ABIE40_RS19975at 94.921 kb on + strand, within ABIE40_RS19975at 94.921 kb on + strand, within ABIE40_RS19975at 94.922 kb on - strand, within ABIE40_RS19975at 94.922 kb on - strand, within ABIE40_RS19975at 95.166 kb on + strand, within ABIE40_RS19975at 95.166 kb on + strand, within ABIE40_RS19975at 95.167 kb on - strand, within ABIE40_RS19975at 95.172 kb on + strand, within ABIE40_RS19975at 95.797 kb on + strand, within ABIE40_RS19980at 95.797 kb on + strand, within ABIE40_RS19980at 95.798 kb on - strand, within ABIE40_RS19980at 95.798 kb on - strand, within ABIE40_RS19980at 95.863 kb on + strand, within ABIE40_RS19980at 95.863 kb on + strand, within ABIE40_RS19980at 95.863 kb on + strand, within ABIE40_RS19980at 96.170 kb on - strand, within ABIE40_RS19980at 96.178 kb on + strand, within ABIE40_RS19980at 96.178 kb on + strand, within ABIE40_RS19980at 96.178 kb on + strand, within ABIE40_RS19980at 96.200 kb on + strand, within ABIE40_RS19980at 96.200 kb on + strand, within ABIE40_RS19980at 96.201 kb on - strand, within ABIE40_RS19980

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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93,232 + ABIE40_RS19965 0.41 -1.5
93,232 + ABIE40_RS19965 0.41 +0.3
93,233 - ABIE40_RS19965 0.41 +0.2
93,233 - ABIE40_RS19965 0.41 -1.4
93,288 + ABIE40_RS19965 0.46 +2.2
93,288 + ABIE40_RS19965 0.46 -2.3
93,289 - ABIE40_RS19965 0.46 +1.8
93,289 - ABIE40_RS19965 0.46 -1.0
93,289 - ABIE40_RS19965 0.46 +0.8
93,436 + ABIE40_RS19965 0.60 -0.4
93,437 - ABIE40_RS19965 0.60 +1.4
93,437 - ABIE40_RS19965 0.60 -1.7
93,437 - ABIE40_RS19965 0.60 -3.6
93,437 - ABIE40_RS19965 0.60 -0.4
93,750 + ABIE40_RS19965 0.89 -1.5
94,016 + ABIE40_RS19970 0.47 -0.4
94,017 - ABIE40_RS19970 0.47 -0.7
94,018 + ABIE40_RS19970 0.48 +0.0
94,019 - ABIE40_RS19970 0.48 +0.1
94,069 + ABIE40_RS19970 0.63 +0.6
94,069 + ABIE40_RS19970 0.63 +0.0
94,070 - ABIE40_RS19970 0.63 +0.3
94,070 - ABIE40_RS19970 0.63 +2.2
94,124 + ABIE40_RS19970 0.80 -0.2
94,139 - ABIE40_RS19970 0.84 -0.3
94,139 - ABIE40_RS19970 0.84 +0.1
94,356 + ABIE40_RS19975 0.14 +1.0
94,356 + ABIE40_RS19975 0.14 -1.8
94,357 - ABIE40_RS19975 0.14 -1.8
94,365 + ABIE40_RS19975 0.15 +2.2
94,366 - ABIE40_RS19975 0.15 +0.6
94,366 - ABIE40_RS19975 0.15 -0.4
94,366 - ABIE40_RS19975 0.15 -0.1
94,477 + ABIE40_RS19975 0.25 -0.5
94,534 + ABIE40_RS19975 0.30 -3.5
94,534 + ABIE40_RS19975 0.30 +0.2
94,534 + ABIE40_RS19975 0.30 -0.5
94,535 - ABIE40_RS19975 0.30 -0.6
94,535 - ABIE40_RS19975 0.30 -1.4
94,535 - ABIE40_RS19975 0.30 -0.5
94,535 - ABIE40_RS19975 0.30 +0.1
94,535 - ABIE40_RS19975 0.30 +0.3
94,535 - ABIE40_RS19975 0.30 +0.2
94,535 - ABIE40_RS19975 0.30 -1.7
94,535 - ABIE40_RS19975 0.30 -1.1
94,535 - ABIE40_RS19975 0.30 -0.1
94,535 - ABIE40_RS19975 0.30 +0.1
94,536 + ABIE40_RS19975 0.30 -1.3
94,536 + ABIE40_RS19975 0.30 -0.0
94,536 + ABIE40_RS19975 0.30 +0.7
94,537 - ABIE40_RS19975 0.30 -0.5
94,537 - ABIE40_RS19975 0.30 +1.1
94,537 - ABIE40_RS19975 0.30 -1.2
94,537 - ABIE40_RS19975 0.30 -0.2
94,537 - ABIE40_RS19975 0.30 -0.8
94,537 - ABIE40_RS19975 0.30 -0.1
94,537 - ABIE40_RS19975 0.30 +0.6
94,561 - ABIE40_RS19975 0.32 -2.2
94,612 + ABIE40_RS19975 0.37 -0.1
94,612 + ABIE40_RS19975 0.37 -0.6
94,613 - ABIE40_RS19975 0.37 -1.1
94,782 + ABIE40_RS19975 0.52 -0.3
94,782 + ABIE40_RS19975 0.52 -1.1
94,782 + ABIE40_RS19975 0.52 -0.4
94,782 + ABIE40_RS19975 0.52 -0.4
94,782 + ABIE40_RS19975 0.52 +1.1
94,783 - ABIE40_RS19975 0.52 -0.6
94,783 - ABIE40_RS19975 0.52 +0.7
94,783 - ABIE40_RS19975 0.52 +0.2
94,783 - ABIE40_RS19975 0.52 -0.4
94,883 - ABIE40_RS19975 0.61 -1.8
94,908 + ABIE40_RS19975 0.63 -1.0
94,909 - ABIE40_RS19975 0.64 +0.1
94,909 - ABIE40_RS19975 0.64 +0.1
94,909 - ABIE40_RS19975 0.64 +0.5
94,909 - ABIE40_RS19975 0.64 +0.6
94,909 - ABIE40_RS19975 0.64 -2.9
94,921 + ABIE40_RS19975 0.65 -2.1
94,921 + ABIE40_RS19975 0.65 -0.3
94,921 + ABIE40_RS19975 0.65 -0.1
94,921 + ABIE40_RS19975 0.65 -1.6
94,922 - ABIE40_RS19975 0.65 +1.5
94,922 - ABIE40_RS19975 0.65 -1.0
95,166 + ABIE40_RS19975 0.87 +0.5
95,166 + ABIE40_RS19975 0.87 +0.2
95,167 - ABIE40_RS19975 0.87 -1.1
95,172 + ABIE40_RS19975 0.87 +0.0
95,797 + ABIE40_RS19980 0.42 -1.2
95,797 + ABIE40_RS19980 0.42 +5.0
95,798 - ABIE40_RS19980 0.43 -1.1
95,798 - ABIE40_RS19980 0.43 +1.4
95,863 + ABIE40_RS19980 0.48 +0.2
95,863 + ABIE40_RS19980 0.48 -0.1
95,863 + ABIE40_RS19980 0.48 +0.5
96,170 - ABIE40_RS19980 0.76 +0.5
96,178 + ABIE40_RS19980 0.77 -0.8
96,178 + ABIE40_RS19980 0.77 +0.6
96,178 + ABIE40_RS19980 0.77 -0.2
96,200 + ABIE40_RS19980 0.79 -0.5
96,200 + ABIE40_RS19980 0.79 +0.5
96,201 - ABIE40_RS19980 0.79 +0.5

Or see this region's nucleotide sequence