Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28075 and ABID97_RS28080 are separated by 12 nucleotides ABID97_RS28080 and ABID97_RS28085 are separated by 311 nucleotides ABID97_RS28085 and ABID97_RS28090 are separated by 35 nucleotides
ABID97_RS28075: ABID97_RS28075 - tyrosine-type recombinase/integrase, at 533,069 to 534,082
_RS28075
ABID97_RS28080: ABID97_RS28080 - YbaN family protein, at 534,095 to 534,469
_RS28080
ABID97_RS28085: ABID97_RS28085 - hypothetical protein, at 534,781 to 535,431
_RS28085
ABID97_RS28090: ABID97_RS28090 - hypothetical protein, at 535,467 to 536,189
_RS28090
Position (kb) 534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 533.336 kb on + strand, within ABID97_RS28075 at 533.453 kb on + strand, within ABID97_RS28075 at 533.454 kb on - strand, within ABID97_RS28075 at 533.521 kb on + strand, within ABID97_RS28075 at 533.522 kb on - strand, within ABID97_RS28075 at 533.882 kb on + strand, within ABID97_RS28075 at 533.883 kb on - strand, within ABID97_RS28075 at 533.883 kb on - strand, within ABID97_RS28075 at 534.044 kb on + strand at 534.045 kb on - strand at 534.045 kb on - strand at 534.276 kb on + strand, within ABID97_RS28080 at 534.531 kb on + strand at 534.531 kb on + strand at 534.532 kb on - strand at 534.532 kb on - strand at 534.532 kb on - strand at 534.602 kb on + strand at 534.602 kb on + strand at 534.653 kb on - strand at 534.700 kb on + strand at 535.376 kb on - strand at 535.411 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 533,336 + ABID97_RS28075 0.26 -0.0 533,453 + ABID97_RS28075 0.38 -0.3 533,454 - ABID97_RS28075 0.38 -1.4 533,521 + ABID97_RS28075 0.45 -0.0 533,522 - ABID97_RS28075 0.45 -0.5 533,882 + ABID97_RS28075 0.80 +0.2 533,883 - ABID97_RS28075 0.80 -0.4 533,883 - ABID97_RS28075 0.80 -0.5 534,044 + +0.4 534,045 - +0.2 534,045 - -1.3 534,276 + ABID97_RS28080 0.48 +0.5 534,531 + +0.1 534,531 + -1.1 534,532 - -1.5 534,532 - -0.6 534,532 - -0.0 534,602 + +1.8 534,602 + +1.0 534,653 - +2.0 534,700 + -0.5 535,376 - -3.1 535,411 + -1.6
Or see this region's nucleotide sequence