Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26875

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26870 and ABID97_RS26875 are separated by 98 nucleotidesABID97_RS26875 and ABID97_RS26880 are separated by 33 nucleotides ABID97_RS26870: ABID97_RS26870 - LysR substrate-binding domain-containing protein, at 297,701 to 298,626 _RS26870 ABID97_RS26875: ABID97_RS26875 - NUDIX hydrolase, at 298,725 to 299,201 _RS26875 ABID97_RS26880: ABID97_RS26880 - tripartite tricarboxylate transporter substrate binding protein, at 299,235 to 300,212 _RS26880 Position (kb) 298 299 300Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 298.637 kb on + strandat 298.637 kb on + strandat 298.638 kb on - strandat 298.995 kb on + strand, within ABID97_RS26875at 298.996 kb on - strand, within ABID97_RS26875at 299.049 kb on + strand, within ABID97_RS26875at 299.236 kb on + strandat 299.236 kb on + strandat 299.237 kb on - strandat 299.364 kb on + strand, within ABID97_RS26880at 299.815 kb on + strand, within ABID97_RS26880at 299.945 kb on - strand, within ABID97_RS26880

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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298,637 + -1.3
298,637 + -0.6
298,638 - -0.1
298,995 + ABID97_RS26875 0.57 +0.7
298,996 - ABID97_RS26875 0.57 +1.0
299,049 + ABID97_RS26875 0.68 +0.2
299,236 + -3.2
299,236 + -0.4
299,237 - +1.5
299,364 + ABID97_RS26880 0.13 -0.3
299,815 + ABID97_RS26880 0.59 +2.6
299,945 - ABID97_RS26880 0.73 -1.4

Or see this region's nucleotide sequence