Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25835

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25825 and ABID97_RS25830 are separated by 2 nucleotidesABID97_RS25830 and ABID97_RS25835 overlap by 4 nucleotidesABID97_RS25835 and ABID97_RS25840 are separated by 47 nucleotidesABID97_RS25840 and ABID97_RS25845 are separated by 4 nucleotides ABID97_RS25825: ABID97_RS25825 - HHHH-motif protein, at 85,713 to 85,886 _RS25825 ABID97_RS25830: ABID97_RS25830 - Gfo/Idh/MocA family oxidoreductase, at 85,889 to 86,878 _RS25830 ABID97_RS25835: ABID97_RS25835 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 86,875 to 87,993 _RS25835 ABID97_RS25840: ABID97_RS25840 - carbohydrate ABC transporter permease, at 88,041 to 88,931 _RS25840 ABID97_RS25845: ABID97_RS25845 - sugar ABC transporter permease, at 88,936 to 89,898 _RS25845 Position (kb) 86 87 88Strain fitness (log2 ratio) -3 -2 -1 0 1at 86.007 kb on + strand, within ABID97_RS25830at 86.019 kb on + strand, within ABID97_RS25830at 86.319 kb on - strand, within ABID97_RS25830at 87.422 kb on + strand, within ABID97_RS25835at 87.422 kb on - strand, within ABID97_RS25835at 87.423 kb on - strand, within ABID97_RS25835at 87.956 kb on + strandat 88.096 kb on + strandat 88.405 kb on + strand, within ABID97_RS25840at 88.405 kb on + strand, within ABID97_RS25840at 88.406 kb on - strand, within ABID97_RS25840at 88.474 kb on + strand, within ABID97_RS25840at 88.664 kb on - strand, within ABID97_RS25840at 88.664 kb on - strand, within ABID97_RS25840at 88.805 kb on - strand, within ABID97_RS25840at 88.814 kb on - strand, within ABID97_RS25840

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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86,007 + ABID97_RS25830 0.12 -0.7
86,019 + ABID97_RS25830 0.13 -2.2
86,319 - ABID97_RS25830 0.43 -0.5
87,422 + ABID97_RS25835 0.49 -0.5
87,422 - ABID97_RS25835 0.49 -0.5
87,423 - ABID97_RS25835 0.49 -0.6
87,956 + -1.3
88,096 + +1.7
88,405 + ABID97_RS25840 0.41 +0.1
88,405 + ABID97_RS25840 0.41 -1.4
88,406 - ABID97_RS25840 0.41 -3.1
88,474 + ABID97_RS25840 0.49 +1.1
88,664 - ABID97_RS25840 0.70 -0.5
88,664 - ABID97_RS25840 0.70 -2.4
88,805 - ABID97_RS25840 0.86 -2.2
88,814 - ABID97_RS25840 0.87 +0.0

Or see this region's nucleotide sequence