Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25545

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25540 and ABID97_RS25545 overlap by 4 nucleotidesABID97_RS25545 and ABID97_RS25550 are separated by 135 nucleotides ABID97_RS25540: ABID97_RS25540 - sugar ABC transporter ATP-binding protein, at 26,243 to 27,802 _RS25540 ABID97_RS25545: ABID97_RS25545 - ABC transporter permease, at 27,799 to 29,838 _RS25545 ABID97_RS25550: ABID97_RS25550 - alpha/beta fold hydrolase, at 29,974 to 31,188 _RS25550 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -2 -1 0 1at 27.566 kb on + strand, within ABID97_RS25540at 27.567 kb on - strand, within ABID97_RS25540at 27.567 kb on - strand, within ABID97_RS25540at 27.614 kb on + strand, within ABID97_RS25540at 27.615 kb on - strand, within ABID97_RS25540at 28.093 kb on + strand, within ABID97_RS25545at 28.414 kb on + strand, within ABID97_RS25545at 29.464 kb on + strand, within ABID97_RS25545at 29.465 kb on - strand, within ABID97_RS25545at 29.690 kb on - strandat 29.782 kb on + strandat 29.957 kb on + strandat 29.957 kb on + strandat 30.415 kb on + strand, within ABID97_RS25550at 30.416 kb on - strand, within ABID97_RS25550at 30.442 kb on + strand, within ABID97_RS25550at 30.443 kb on - strand, within ABID97_RS25550

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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27,566 + ABID97_RS25540 0.85 -0.4
27,567 - ABID97_RS25540 0.85 -0.6
27,567 - ABID97_RS25540 0.85 -0.7
27,614 + ABID97_RS25540 0.88 -2.1
27,615 - ABID97_RS25540 0.88 -1.6
28,093 + ABID97_RS25545 0.14 -1.3
28,414 + ABID97_RS25545 0.30 -0.8
29,464 + ABID97_RS25545 0.82 +0.6
29,465 - ABID97_RS25545 0.82 -2.0
29,690 - -0.3
29,782 + +1.5
29,957 + -1.6
29,957 + +0.8
30,415 + ABID97_RS25550 0.36 -0.7
30,416 - ABID97_RS25550 0.36 -0.6
30,442 + ABID97_RS25550 0.39 -0.3
30,443 - ABID97_RS25550 0.39 -1.1

Or see this region's nucleotide sequence