Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25425 and ABID97_RS25430 overlap by 4 nucleotides ABID97_RS25430 and ABID97_RS25435 overlap by 4 nucleotides ABID97_RS25435 and ABID97_RS25440 are separated by 23 nucleotides
ABID97_RS25425: ABID97_RS25425 - ATP-binding cassette domain-containing protein, at 3,307 to 4,092
_RS25425
ABID97_RS25430: ABID97_RS25430 - branched-chain amino acid ABC transporter permease, at 4,089 to 5,033
_RS25430
ABID97_RS25435: ABID97_RS25435 - branched-chain amino acid ABC transporter permease, at 5,030 to 5,926
_RS25435
ABID97_RS25440: ABID97_RS25440 - ABC transporter substrate-binding protein, at 5,950 to 7,263
_RS25440
Position (kb) 5
6 Strain fitness (log2 ratio) -1
0
1 at 4.399 kb on + strand, within ABID97_RS25430 at 4.400 kb on - strand, within ABID97_RS25430 at 4.438 kb on + strand, within ABID97_RS25430 at 4.439 kb on - strand, within ABID97_RS25430 at 4.832 kb on - strand, within ABID97_RS25430 at 5.034 kb on - strand at 5.485 kb on - strand, within ABID97_RS25435 at 5.799 kb on + strand, within ABID97_RS25435 at 5.886 kb on + strand at 6.299 kb on + strand, within ABID97_RS25440 at 6.300 kb on - strand, within ABID97_RS25440 at 6.591 kb on - strand, within ABID97_RS25440 at 6.752 kb on + strand, within ABID97_RS25440 at 6.807 kb on - strand, within ABID97_RS25440 at 6.807 kb on - strand, within ABID97_RS25440 at 6.812 kb on + strand, within ABID97_RS25440 at 6.813 kb on - strand, within ABID97_RS25440
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 4,399 + ABID97_RS25430 0.33 -0.6 4,400 - ABID97_RS25430 0.33 -0.3 4,438 + ABID97_RS25430 0.37 +0.7 4,439 - ABID97_RS25430 0.37 +0.7 4,832 - ABID97_RS25430 0.79 -0.6 5,034 - -0.1 5,485 - ABID97_RS25435 0.51 -0.8 5,799 + ABID97_RS25435 0.86 -0.9 5,886 + +0.1 6,299 + ABID97_RS25440 0.27 +0.5 6,300 - ABID97_RS25440 0.27 +1.4 6,591 - ABID97_RS25440 0.49 +0.6 6,752 + ABID97_RS25440 0.61 -0.3 6,807 - ABID97_RS25440 0.65 -1.3 6,807 - ABID97_RS25440 0.65 +1.4 6,812 + ABID97_RS25440 0.66 -0.0 6,813 - ABID97_RS25440 0.66 +0.3
Or see this region's nucleotide sequence