Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20920 and ABID97_RS20925 are separated by 248 nucleotides ABID97_RS20925 and ABID97_RS20930 are separated by 202 nucleotides
ABID97_RS20920: ABID97_RS20920 - ammonium transporter, at 4,326,281 to 4,327,483
_RS20920
ABID97_RS20925: ABID97_RS20925 - PaaI family thioesterase, at 4,327,732 to 4,328,172
_RS20925
ABID97_RS20930: ABID97_RS20930 - DUF4139 domain-containing protein, at 4,328,375 to 4,330,021
_RS20930
Position (kb)
4327
4328
4329 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 4327.092 kb on + strand, within ABID97_RS20920 at 4327.311 kb on + strand, within ABID97_RS20920 at 4327.311 kb on + strand, within ABID97_RS20920 at 4327.312 kb on - strand, within ABID97_RS20920 at 4327.312 kb on - strand, within ABID97_RS20920 at 4327.471 kb on + strand at 4327.472 kb on - strand at 4327.472 kb on - strand at 4327.680 kb on + strand at 4327.681 kb on - strand at 4327.841 kb on + strand, within ABID97_RS20925 at 4327.842 kb on - strand, within ABID97_RS20925 at 4328.043 kb on - strand, within ABID97_RS20925 at 4328.223 kb on + strand at 4328.223 kb on + strand at 4328.223 kb on + strand at 4328.224 kb on - strand at 4328.224 kb on - strand at 4328.224 kb on - strand at 4328.526 kb on - strand at 4328.798 kb on + strand, within ABID97_RS20930 at 4329.071 kb on + strand, within ABID97_RS20930 at 4329.072 kb on - strand, within ABID97_RS20930 at 4329.072 kb on - strand, within ABID97_RS20930 at 4329.072 kb on - strand, within ABID97_RS20930
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 4,327,092 + ABID97_RS20920 0.67 -4.7 4,327,311 + ABID97_RS20920 0.86 -0.8 4,327,311 + ABID97_RS20920 0.86 +1.0 4,327,312 - ABID97_RS20920 0.86 +0.5 4,327,312 - ABID97_RS20920 0.86 -5.3 4,327,471 + -0.7 4,327,472 - +0.7 4,327,472 - -0.2 4,327,680 + -0.6 4,327,681 - -0.4 4,327,841 + ABID97_RS20925 0.25 -0.4 4,327,842 - ABID97_RS20925 0.25 -1.6 4,328,043 - ABID97_RS20925 0.71 +0.4 4,328,223 + +0.6 4,328,223 + +0.3 4,328,223 + +0.2 4,328,224 - -2.5 4,328,224 - -0.5 4,328,224 - -0.9 4,328,526 - -0.3 4,328,798 + ABID97_RS20930 0.26 -0.2 4,329,071 + ABID97_RS20930 0.42 -0.7 4,329,072 - ABID97_RS20930 0.42 -2.3 4,329,072 - ABID97_RS20930 0.42 +0.2 4,329,072 - ABID97_RS20930 0.42 -0.8
Or see this region's nucleotide sequence