Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20925

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20920 and ABID97_RS20925 are separated by 248 nucleotidesABID97_RS20925 and ABID97_RS20930 are separated by 202 nucleotides ABID97_RS20920: ABID97_RS20920 - ammonium transporter, at 4,326,281 to 4,327,483 _RS20920 ABID97_RS20925: ABID97_RS20925 - PaaI family thioesterase, at 4,327,732 to 4,328,172 _RS20925 ABID97_RS20930: ABID97_RS20930 - DUF4139 domain-containing protein, at 4,328,375 to 4,330,021 _RS20930 Position (kb) 4327 4328 4329Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4327.092 kb on + strand, within ABID97_RS20920at 4327.311 kb on + strand, within ABID97_RS20920at 4327.311 kb on + strand, within ABID97_RS20920at 4327.312 kb on - strand, within ABID97_RS20920at 4327.312 kb on - strand, within ABID97_RS20920at 4327.471 kb on + strandat 4327.472 kb on - strandat 4327.472 kb on - strandat 4327.680 kb on + strandat 4327.681 kb on - strandat 4327.841 kb on + strand, within ABID97_RS20925at 4327.842 kb on - strand, within ABID97_RS20925at 4328.043 kb on - strand, within ABID97_RS20925at 4328.223 kb on + strandat 4328.223 kb on + strandat 4328.223 kb on + strandat 4328.224 kb on - strandat 4328.224 kb on - strandat 4328.224 kb on - strandat 4328.526 kb on - strandat 4328.798 kb on + strand, within ABID97_RS20930at 4329.071 kb on + strand, within ABID97_RS20930at 4329.072 kb on - strand, within ABID97_RS20930at 4329.072 kb on - strand, within ABID97_RS20930at 4329.072 kb on - strand, within ABID97_RS20930

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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4,327,092 + ABID97_RS20920 0.67 -4.7
4,327,311 + ABID97_RS20920 0.86 -0.8
4,327,311 + ABID97_RS20920 0.86 +1.0
4,327,312 - ABID97_RS20920 0.86 +0.5
4,327,312 - ABID97_RS20920 0.86 -5.3
4,327,471 + -0.7
4,327,472 - +0.7
4,327,472 - -0.2
4,327,680 + -0.6
4,327,681 - -0.4
4,327,841 + ABID97_RS20925 0.25 -0.4
4,327,842 - ABID97_RS20925 0.25 -1.6
4,328,043 - ABID97_RS20925 0.71 +0.4
4,328,223 + +0.6
4,328,223 + +0.3
4,328,223 + +0.2
4,328,224 - -2.5
4,328,224 - -0.5
4,328,224 - -0.9
4,328,526 - -0.3
4,328,798 + ABID97_RS20930 0.26 -0.2
4,329,071 + ABID97_RS20930 0.42 -0.7
4,329,072 - ABID97_RS20930 0.42 -2.3
4,329,072 - ABID97_RS20930 0.42 +0.2
4,329,072 - ABID97_RS20930 0.42 -0.8

Or see this region's nucleotide sequence