Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19925

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19915 and ABID97_RS19920 are separated by 4 nucleotidesABID97_RS19920 and ABID97_RS19925 are separated by 81 nucleotidesABID97_RS19925 and ABID97_RS19930 are separated by 95 nucleotidesABID97_RS19930 and ABID97_RS19935 are separated by 50 nucleotides ABID97_RS19915: ABID97_RS19915 - lytic murein transglycosylase B, at 4,111,222 to 4,112,313 _RS19915 ABID97_RS19920: ABID97_RS19920 - N-methyl-D-aspartate receptor NMDAR2C subunit, at 4,112,318 to 4,112,944 _RS19920 ABID97_RS19925: ABID97_RS19925 - ABC transporter substrate-binding protein, at 4,113,026 to 4,114,756 _RS19925 ABID97_RS19930: ABID97_RS19930 - DUF2160 domain-containing protein, at 4,114,852 to 4,115,160 _RS19930 ABID97_RS19935: ABID97_RS19935 - carbohydrate ABC transporter permease, at 4,115,211 to 4,116,023 _RS19935 Position (kb) 4113 4114 4115Strain fitness (log2 ratio) -3 -2 -1 0 1at 4112.200 kb on + strand, within ABID97_RS19915at 4112.200 kb on + strand, within ABID97_RS19915at 4112.201 kb on - strand, within ABID97_RS19915at 4112.225 kb on - strandat 4112.254 kb on + strandat 4112.254 kb on + strandat 4112.254 kb on + strandat 4112.254 kb on + strandat 4112.438 kb on + strand, within ABID97_RS19920at 4112.550 kb on - strand, within ABID97_RS19920at 4112.763 kb on - strand, within ABID97_RS19920at 4113.070 kb on - strandat 4113.372 kb on + strand, within ABID97_RS19925at 4113.507 kb on + strand, within ABID97_RS19925at 4113.604 kb on - strand, within ABID97_RS19925at 4113.702 kb on + strand, within ABID97_RS19925at 4113.790 kb on - strand, within ABID97_RS19925at 4113.810 kb on + strand, within ABID97_RS19925at 4113.825 kb on + strand, within ABID97_RS19925at 4114.131 kb on + strand, within ABID97_RS19925at 4114.320 kb on + strand, within ABID97_RS19925at 4114.321 kb on - strand, within ABID97_RS19925at 4114.396 kb on - strand, within ABID97_RS19925at 4114.522 kb on - strand, within ABID97_RS19925at 4114.743 kb on + strandat 4114.744 kb on - strandat 4114.983 kb on - strand, within ABID97_RS19930at 4115.209 kb on - strandat 4115.515 kb on + strand, within ABID97_RS19935at 4115.515 kb on + strand, within ABID97_RS19935at 4115.756 kb on - strand, within ABID97_RS19935at 4115.756 kb on - strand, within ABID97_RS19935

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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4,112,200 + ABID97_RS19915 0.90 -0.8
4,112,200 + ABID97_RS19915 0.90 -0.5
4,112,201 - ABID97_RS19915 0.90 -0.0
4,112,225 - -0.8
4,112,254 + +0.7
4,112,254 + -0.7
4,112,254 + -0.5
4,112,254 + +1.4
4,112,438 + ABID97_RS19920 0.19 +0.5
4,112,550 - ABID97_RS19920 0.37 -0.3
4,112,763 - ABID97_RS19920 0.71 +0.1
4,113,070 - -0.3
4,113,372 + ABID97_RS19925 0.20 +0.0
4,113,507 + ABID97_RS19925 0.28 -1.0
4,113,604 - ABID97_RS19925 0.33 +0.2
4,113,702 + ABID97_RS19925 0.39 +0.0
4,113,790 - ABID97_RS19925 0.44 -0.5
4,113,810 + ABID97_RS19925 0.45 +0.3
4,113,825 + ABID97_RS19925 0.46 -2.8
4,114,131 + ABID97_RS19925 0.64 -1.5
4,114,320 + ABID97_RS19925 0.75 -1.6
4,114,321 - ABID97_RS19925 0.75 -0.6
4,114,396 - ABID97_RS19925 0.79 -0.1
4,114,522 - ABID97_RS19925 0.86 -0.5
4,114,743 + -0.5
4,114,744 - +0.6
4,114,983 - ABID97_RS19930 0.42 +0.2
4,115,209 - -0.9
4,115,515 + ABID97_RS19935 0.37 +0.4
4,115,515 + ABID97_RS19935 0.37 -1.4
4,115,756 - ABID97_RS19935 0.67 +0.0
4,115,756 - ABID97_RS19935 0.67 +0.4

Or see this region's nucleotide sequence