Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15735

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15725 and ABID97_RS15730 overlap by 1 nucleotidesABID97_RS15730 and ABID97_RS15735 are separated by 5 nucleotidesABID97_RS15735 and ABID97_RS15740 are separated by 259 nucleotides ABID97_RS15725: ABID97_RS15725 - branched-chain amino acid ABC transporter permease, at 3,256,417 to 3,257,733 _RS15725 ABID97_RS15730: ABID97_RS15730 - ABC transporter ATP-binding protein, at 3,257,733 to 3,258,509 _RS15730 ABID97_RS15735: ABID97_RS15735 - ABC transporter ATP-binding protein, at 3,258,515 to 3,259,210 _RS15735 ABID97_RS15740: ABID97_RS15740 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 3,259,470 to 3,261,575 _RS15740 Position (kb) 3258 3259 3260Strain fitness (log2 ratio) -3 -2 -1 0 1at 3258.073 kb on - strand, within ABID97_RS15730at 3258.399 kb on + strand, within ABID97_RS15730at 3258.465 kb on + strandat 3258.466 kb on - strandat 3258.466 kb on - strandat 3258.511 kb on + strandat 3258.749 kb on + strand, within ABID97_RS15735at 3258.857 kb on + strand, within ABID97_RS15735at 3258.858 kb on - strand, within ABID97_RS15735at 3258.858 kb on - strand, within ABID97_RS15735at 3258.858 kb on - strand, within ABID97_RS15735at 3259.482 kb on + strandat 3260.121 kb on + strand, within ABID97_RS15740

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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3,258,073 - ABID97_RS15730 0.44 +0.7
3,258,399 + ABID97_RS15730 0.86 -0.8
3,258,465 + +0.2
3,258,466 - -1.5
3,258,466 - -0.7
3,258,511 + +0.2
3,258,749 + ABID97_RS15735 0.34 -1.3
3,258,857 + ABID97_RS15735 0.49 +1.0
3,258,858 - ABID97_RS15735 0.49 -2.3
3,258,858 - ABID97_RS15735 0.49 -3.1
3,258,858 - ABID97_RS15735 0.49 -1.8
3,259,482 + -0.4
3,260,121 + ABID97_RS15740 0.31 +0.1

Or see this region's nucleotide sequence