Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11820

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11810 and ABID97_RS11815 are separated by 255 nucleotidesABID97_RS11815 and ABID97_RS11820 are separated by 36 nucleotidesABID97_RS11820 and ABID97_RS11825 are separated by 7 nucleotidesABID97_RS11825 and ABID97_RS11830 are separated by 0 nucleotidesABID97_RS11830 and ABID97_RS11835 are separated by 45 nucleotides ABID97_RS11810: ABID97_RS11810 - hypothetical protein, at 2,440,710 to 2,440,952 _RS11810 ABID97_RS11815: ABID97_RS11815 - hypothetical protein, at 2,441,208 to 2,441,699 _RS11815 ABID97_RS11820: ABID97_RS11820 - SDR family oxidoreductase, at 2,441,736 to 2,443,076 _RS11820 ABID97_RS11825: ABID97_RS11825 - DUF2269 domain-containing protein, at 2,443,084 to 2,443,557 _RS11825 ABID97_RS11830: ABID97_RS11830 - hypothetical protein, at 2,443,558 to 2,443,818 _RS11830 ABID97_RS11835: ABID97_RS11835 - ZIP family metal transporter, at 2,443,864 to 2,444,769 _RS11835 Position (kb) 2441 2442 2443 2444Strain fitness (log2 ratio) -2 -1 0 1at 2440.740 kb on - strand, within ABID97_RS11810at 2441.002 kb on - strandat 2441.466 kb on + strand, within ABID97_RS11815at 2441.466 kb on + strand, within ABID97_RS11815at 2441.634 kb on + strand, within ABID97_RS11815at 2441.634 kb on + strand, within ABID97_RS11815at 2441.635 kb on - strand, within ABID97_RS11815at 2442.117 kb on + strand, within ABID97_RS11820at 2442.403 kb on - strand, within ABID97_RS11820at 2442.707 kb on - strand, within ABID97_RS11820at 2442.921 kb on + strand, within ABID97_RS11820at 2443.090 kb on + strandat 2443.090 kb on + strandat 2443.090 kb on + strandat 2443.105 kb on + strandat 2443.348 kb on + strand, within ABID97_RS11825at 2443.349 kb on - strand, within ABID97_RS11825at 2443.752 kb on - strand, within ABID97_RS11830at 2443.752 kb on - strand, within ABID97_RS11830

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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2,440,740 - ABID97_RS11810 0.12 -0.7
2,441,002 - +0.1
2,441,466 + ABID97_RS11815 0.52 +1.3
2,441,466 + ABID97_RS11815 0.52 -0.3
2,441,634 + ABID97_RS11815 0.87 -0.8
2,441,634 + ABID97_RS11815 0.87 +0.1
2,441,635 - ABID97_RS11815 0.87 -0.9
2,442,117 + ABID97_RS11820 0.28 +0.2
2,442,403 - ABID97_RS11820 0.50 +1.1
2,442,707 - ABID97_RS11820 0.72 -0.5
2,442,921 + ABID97_RS11820 0.88 -1.7
2,443,090 + -1.1
2,443,090 + -2.3
2,443,090 + +1.1
2,443,105 + -0.5
2,443,348 + ABID97_RS11825 0.56 -1.4
2,443,349 - ABID97_RS11825 0.56 -0.8
2,443,752 - ABID97_RS11830 0.74 -1.1
2,443,752 - ABID97_RS11830 0.74 -1.6

Or see this region's nucleotide sequence