Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11810 and ABID97_RS11815 are separated by 255 nucleotides ABID97_RS11815 and ABID97_RS11820 are separated by 36 nucleotides ABID97_RS11820 and ABID97_RS11825 are separated by 7 nucleotides ABID97_RS11825 and ABID97_RS11830 are separated by 0 nucleotides ABID97_RS11830 and ABID97_RS11835 are separated by 45 nucleotides
ABID97_RS11810: ABID97_RS11810 - hypothetical protein, at 2,440,710 to 2,440,952
_RS11810
ABID97_RS11815: ABID97_RS11815 - hypothetical protein, at 2,441,208 to 2,441,699
_RS11815
ABID97_RS11820: ABID97_RS11820 - SDR family oxidoreductase, at 2,441,736 to 2,443,076
_RS11820
ABID97_RS11825: ABID97_RS11825 - DUF2269 domain-containing protein, at 2,443,084 to 2,443,557
_RS11825
ABID97_RS11830: ABID97_RS11830 - hypothetical protein, at 2,443,558 to 2,443,818
_RS11830
ABID97_RS11835: ABID97_RS11835 - ZIP family metal transporter, at 2,443,864 to 2,444,769
_RS11835
Position (kb)
2441
2442
2443
2444 Strain fitness (log2 ratio)
-2
-1
0
1 at 2440.740 kb on - strand, within ABID97_RS11810 at 2441.002 kb on - strand at 2441.466 kb on + strand, within ABID97_RS11815 at 2441.466 kb on + strand, within ABID97_RS11815 at 2441.634 kb on + strand, within ABID97_RS11815 at 2441.634 kb on + strand, within ABID97_RS11815 at 2441.635 kb on - strand, within ABID97_RS11815 at 2442.117 kb on + strand, within ABID97_RS11820 at 2442.403 kb on - strand, within ABID97_RS11820 at 2442.707 kb on - strand, within ABID97_RS11820 at 2442.921 kb on + strand, within ABID97_RS11820 at 2443.090 kb on + strand at 2443.090 kb on + strand at 2443.090 kb on + strand at 2443.105 kb on + strand at 2443.348 kb on + strand, within ABID97_RS11825 at 2443.349 kb on - strand, within ABID97_RS11825 at 2443.752 kb on - strand, within ABID97_RS11830 at 2443.752 kb on - strand, within ABID97_RS11830
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 2,440,740 - ABID97_RS11810 0.12 -0.7 2,441,002 - +0.1 2,441,466 + ABID97_RS11815 0.52 +1.3 2,441,466 + ABID97_RS11815 0.52 -0.3 2,441,634 + ABID97_RS11815 0.87 -0.8 2,441,634 + ABID97_RS11815 0.87 +0.1 2,441,635 - ABID97_RS11815 0.87 -0.9 2,442,117 + ABID97_RS11820 0.28 +0.2 2,442,403 - ABID97_RS11820 0.50 +1.1 2,442,707 - ABID97_RS11820 0.72 -0.5 2,442,921 + ABID97_RS11820 0.88 -1.7 2,443,090 + -1.1 2,443,090 + -2.3 2,443,090 + +1.1 2,443,105 + -0.5 2,443,348 + ABID97_RS11825 0.56 -1.4 2,443,349 - ABID97_RS11825 0.56 -0.8 2,443,752 - ABID97_RS11830 0.74 -1.1 2,443,752 - ABID97_RS11830 0.74 -1.6
Or see this region's nucleotide sequence