Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11180

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11170 and ABID97_RS11175 are separated by 151 nucleotidesABID97_RS11175 and ABID97_RS11180 are separated by 61 nucleotidesABID97_RS11180 and ABID97_RS11185 overlap by 4 nucleotides ABID97_RS11170: ABID97_RS11170 - GntR family transcriptional regulator, at 2,310,713 to 2,311,384 _RS11170 ABID97_RS11175: ABID97_RS11175 - SDR family oxidoreductase, at 2,311,536 to 2,312,264 _RS11175 ABID97_RS11180: ABID97_RS11180 - NAD(P)H-quinone oxidoreductase, at 2,312,326 to 2,313,321 _RS11180 ABID97_RS11185: ABID97_RS11185 - transketolase C-terminal domain-containing protein, at 2,313,318 to 2,314,340 _RS11185 Position (kb) 2312 2313 2314Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2311.517 kb on + strandat 2311.530 kb on + strandat 2311.530 kb on + strandat 2311.531 kb on - strandat 2311.531 kb on - strandat 2311.531 kb on - strandat 2311.531 kb on - strandat 2311.541 kb on + strandat 2311.541 kb on + strandat 2311.541 kb on + strandat 2311.541 kb on + strandat 2311.541 kb on + strandat 2311.541 kb on + strandat 2311.542 kb on - strandat 2311.542 kb on - strandat 2311.542 kb on - strandat 2311.542 kb on - strandat 2312.214 kb on + strandat 2312.732 kb on + strand, within ABID97_RS11180at 2312.732 kb on + strand, within ABID97_RS11180at 2312.933 kb on + strand, within ABID97_RS11180at 2312.933 kb on + strand, within ABID97_RS11180at 2312.933 kb on + strand, within ABID97_RS11180at 2312.934 kb on - strand, within ABID97_RS11180at 2312.934 kb on - strand, within ABID97_RS11180at 2312.934 kb on - strand, within ABID97_RS11180at 2312.934 kb on - strand, within ABID97_RS11180at 2313.014 kb on + strand, within ABID97_RS11180at 2313.014 kb on + strand, within ABID97_RS11180at 2313.097 kb on + strand, within ABID97_RS11180at 2313.153 kb on - strand, within ABID97_RS11180at 2313.153 kb on - strand, within ABID97_RS11180at 2313.296 kb on + strandat 2313.296 kb on + strandat 2313.296 kb on + strandat 2313.297 kb on - strandat 2313.297 kb on - strandat 2313.418 kb on + strandat 2313.449 kb on - strand, within ABID97_RS11185at 2313.814 kb on + strand, within ABID97_RS11185at 2313.814 kb on + strand, within ABID97_RS11185at 2314.264 kb on + strandat 2314.264 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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2,311,517 + -3.3
2,311,530 + -2.1
2,311,530 + -0.2
2,311,531 - -0.7
2,311,531 - +0.1
2,311,531 - +2.1
2,311,531 - -0.2
2,311,541 + -2.7
2,311,541 + -0.3
2,311,541 + -0.6
2,311,541 + +1.7
2,311,541 + +0.1
2,311,541 + +1.6
2,311,542 - -1.1
2,311,542 - -0.5
2,311,542 - +0.4
2,311,542 - +0.4
2,312,214 + -1.5
2,312,732 + ABID97_RS11180 0.41 -0.2
2,312,732 + ABID97_RS11180 0.41 +0.3
2,312,933 + ABID97_RS11180 0.61 -3.3
2,312,933 + ABID97_RS11180 0.61 +1.3
2,312,933 + ABID97_RS11180 0.61 +1.2
2,312,934 - ABID97_RS11180 0.61 +0.4
2,312,934 - ABID97_RS11180 0.61 -0.0
2,312,934 - ABID97_RS11180 0.61 +0.7
2,312,934 - ABID97_RS11180 0.61 +0.8
2,313,014 + ABID97_RS11180 0.69 -1.4
2,313,014 + ABID97_RS11180 0.69 -0.1
2,313,097 + ABID97_RS11180 0.77 +0.2
2,313,153 - ABID97_RS11180 0.83 -0.8
2,313,153 - ABID97_RS11180 0.83 +0.8
2,313,296 + +0.0
2,313,296 + -1.1
2,313,296 + -0.7
2,313,297 - +0.8
2,313,297 - +0.3
2,313,418 + +0.4
2,313,449 - ABID97_RS11185 0.13 +0.6
2,313,814 + ABID97_RS11185 0.48 +0.3
2,313,814 + ABID97_RS11185 0.48 +0.8
2,314,264 + +0.4
2,314,264 + -0.1

Or see this region's nucleotide sequence