Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10330

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10325 and ABID97_RS10330 are separated by 32 nucleotidesABID97_RS10330 and ABID97_RS10335 overlap by 10 nucleotidesABID97_RS10335 and ABID97_RS10340 are separated by 201 nucleotides ABID97_RS10325: ABID97_RS10325 - galactarate dehydratase, at 2,143,778 to 2,145,385 _RS10325 ABID97_RS10330: ABID97_RS10330 - TRAP transporter large permease, at 2,145,418 to 2,146,716 _RS10330 ABID97_RS10335: ABID97_RS10335 - TRAP transporter small permease, at 2,146,707 to 2,147,153 _RS10335 ABID97_RS10340: ABID97_RS10340 - TRAP transporter substrate-binding protein, at 2,147,355 to 2,148,323 _RS10340 Position (kb) 2145 2146 2147Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2144.890 kb on - strand, within ABID97_RS10325at 2145.507 kb on - strandat 2145.507 kb on - strandat 2145.565 kb on + strand, within ABID97_RS10330at 2145.566 kb on - strand, within ABID97_RS10330at 2146.136 kb on + strand, within ABID97_RS10330at 2146.140 kb on - strand, within ABID97_RS10330at 2146.500 kb on + strand, within ABID97_RS10330at 2146.616 kb on + strandat 2147.032 kb on + strand, within ABID97_RS10335at 2147.032 kb on + strand, within ABID97_RS10335at 2147.033 kb on - strand, within ABID97_RS10335at 2147.033 kb on - strand, within ABID97_RS10335at 2147.033 kb on - strand, within ABID97_RS10335at 2147.090 kb on - strand, within ABID97_RS10335at 2147.090 kb on - strand, within ABID97_RS10335at 2147.285 kb on + strandat 2147.356 kb on + strandat 2147.419 kb on + strandat 2147.660 kb on - strand, within ABID97_RS10340

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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2,144,890 - ABID97_RS10325 0.69 -0.2
2,145,507 - -0.2
2,145,507 - +2.3
2,145,565 + ABID97_RS10330 0.11 -0.3
2,145,566 - ABID97_RS10330 0.11 +0.7
2,146,136 + ABID97_RS10330 0.55 +2.1
2,146,140 - ABID97_RS10330 0.56 +0.1
2,146,500 + ABID97_RS10330 0.83 +1.0
2,146,616 + +0.9
2,147,032 + ABID97_RS10335 0.73 +2.4
2,147,032 + ABID97_RS10335 0.73 +0.2
2,147,033 - ABID97_RS10335 0.73 -1.7
2,147,033 - ABID97_RS10335 0.73 +3.2
2,147,033 - ABID97_RS10335 0.73 -0.6
2,147,090 - ABID97_RS10335 0.86 +1.0
2,147,090 - ABID97_RS10335 0.86 +1.1
2,147,285 + +1.9
2,147,356 + -3.1
2,147,419 + +0.1
2,147,660 - ABID97_RS10340 0.31 -1.5

Or see this region's nucleotide sequence