Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08955 and ABID97_RS08960 are separated by 129 nucleotides ABID97_RS08960 and ABID97_RS08965 are separated by 128 nucleotides ABID97_RS08965 and ABID97_RS08970 are separated by 79 nucleotides
ABID97_RS08955: ABID97_RS08955 - type VI secretion system contractile sheath large subunit, at 1,876,544 to 1,878,040
_RS08955
ABID97_RS08960: ABID97_RS08960 - type VI secretion system tube protein Hcp, at 1,878,170 to 1,878,655
_RS08960
ABID97_RS08965: ABID97_RS08965 - type VI secretion system baseplate subunit TssK, at 1,878,784 to 1,880,139
_RS08965
ABID97_RS08970: ABID97_RS08970 - type VI secretion system tip protein TssI/VgrG, at 1,880,219 to 1,882,798
_RS08970
Position (kb) 1878
1879
1880
1881 Strain fitness (log2 ratio) -1
0
1 at 1877.939 kb on + strand at 1878.169 kb on + strand at 1878.383 kb on + strand, within ABID97_RS08960 at 1878.907 kb on + strand at 1879.332 kb on - strand, within ABID97_RS08965 at 1879.599 kb on + strand, within ABID97_RS08965 at 1879.759 kb on - strand, within ABID97_RS08965
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 1,877,939 + -1.1 1,878,169 + -0.4 1,878,383 + ABID97_RS08960 0.44 +1.3 1,878,907 + +1.0 1,879,332 - ABID97_RS08965 0.40 -1.6 1,879,599 + ABID97_RS08965 0.60 -0.1 1,879,759 - ABID97_RS08965 0.72 -0.6
Or see this region's nucleotide sequence