Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08850

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08840 and ABID97_RS08845 overlap by 1 nucleotidesABID97_RS08845 and ABID97_RS08850 are separated by 7 nucleotidesABID97_RS08850 and ABID97_RS08855 overlap by 4 nucleotides ABID97_RS08840: ABID97_RS08840 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 1,851,821 to 1,853,134 _RS08840 ABID97_RS08845: ABID97_RS08845 - aromatic-ring-hydroxylating dioxygenase subunit beta, at 1,853,134 to 1,853,622 _RS08845 ABID97_RS08850: ABID97_RS08850 - AMP-binding protein, at 1,853,630 to 1,855,267 _RS08850 ABID97_RS08855: ABID97_RS08855 - thiolase family protein, at 1,855,264 to 1,856,436 _RS08855 Position (kb) 1853 1854 1855 1856Strain fitness (log2 ratio) -2 -1 0 1 2at 1852.667 kb on + strand, within ABID97_RS08840at 1852.764 kb on - strand, within ABID97_RS08840at 1852.764 kb on - strand, within ABID97_RS08840at 1852.904 kb on + strand, within ABID97_RS08840at 1852.905 kb on - strandat 1853.251 kb on + strand, within ABID97_RS08845at 1853.308 kb on + strand, within ABID97_RS08845at 1853.470 kb on + strand, within ABID97_RS08845at 1853.470 kb on + strand, within ABID97_RS08845at 1853.620 kb on + strandat 1853.620 kb on + strandat 1854.134 kb on + strand, within ABID97_RS08850at 1854.135 kb on - strand, within ABID97_RS08850at 1854.135 kb on - strand, within ABID97_RS08850at 1854.185 kb on + strand, within ABID97_RS08850at 1854.210 kb on - strand, within ABID97_RS08850at 1855.729 kb on + strand, within ABID97_RS08855at 1856.005 kb on + strand, within ABID97_RS08855at 1856.006 kb on - strand, within ABID97_RS08855at 1856.062 kb on + strand, within ABID97_RS08855at 1856.063 kb on - strand, within ABID97_RS08855at 1856.111 kb on - strand, within ABID97_RS08855at 1856.120 kb on - strand, within ABID97_RS08855

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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1,852,667 + ABID97_RS08840 0.64 -2.2
1,852,764 - ABID97_RS08840 0.72 -0.2
1,852,764 - ABID97_RS08840 0.72 +0.6
1,852,904 + ABID97_RS08840 0.82 +0.2
1,852,905 - +0.5
1,853,251 + ABID97_RS08845 0.24 -2.4
1,853,308 + ABID97_RS08845 0.36 +1.3
1,853,470 + ABID97_RS08845 0.69 +0.4
1,853,470 + ABID97_RS08845 0.69 +0.3
1,853,620 + +0.6
1,853,620 + -0.6
1,854,134 + ABID97_RS08850 0.31 -0.6
1,854,135 - ABID97_RS08850 0.31 +0.6
1,854,135 - ABID97_RS08850 0.31 -0.0
1,854,185 + ABID97_RS08850 0.34 +0.1
1,854,210 - ABID97_RS08850 0.35 +1.4
1,855,729 + ABID97_RS08855 0.40 +1.0
1,856,005 + ABID97_RS08855 0.63 +1.8
1,856,006 - ABID97_RS08855 0.63 +0.5
1,856,062 + ABID97_RS08855 0.68 -0.4
1,856,063 - ABID97_RS08855 0.68 +0.8
1,856,111 - ABID97_RS08855 0.72 -2.2
1,856,120 - ABID97_RS08855 0.73 -0.3

Or see this region's nucleotide sequence