Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08840 and ABID97_RS08845 overlap by 1 nucleotides ABID97_RS08845 and ABID97_RS08850 are separated by 7 nucleotides ABID97_RS08850 and ABID97_RS08855 overlap by 4 nucleotides
ABID97_RS08840: ABID97_RS08840 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 1,851,821 to 1,853,134
_RS08840
ABID97_RS08845: ABID97_RS08845 - aromatic-ring-hydroxylating dioxygenase subunit beta, at 1,853,134 to 1,853,622
_RS08845
ABID97_RS08850: ABID97_RS08850 - AMP-binding protein, at 1,853,630 to 1,855,267
_RS08850
ABID97_RS08855: ABID97_RS08855 - thiolase family protein, at 1,855,264 to 1,856,436
_RS08855
Position (kb)
1853
1854
1855
1856 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1852.667 kb on + strand, within ABID97_RS08840 at 1852.764 kb on - strand, within ABID97_RS08840 at 1852.764 kb on - strand, within ABID97_RS08840 at 1852.904 kb on + strand, within ABID97_RS08840 at 1852.905 kb on - strand at 1853.251 kb on + strand, within ABID97_RS08845 at 1853.308 kb on + strand, within ABID97_RS08845 at 1853.470 kb on + strand, within ABID97_RS08845 at 1853.470 kb on + strand, within ABID97_RS08845 at 1853.620 kb on + strand at 1853.620 kb on + strand at 1854.134 kb on + strand, within ABID97_RS08850 at 1854.135 kb on - strand, within ABID97_RS08850 at 1854.135 kb on - strand, within ABID97_RS08850 at 1854.185 kb on + strand, within ABID97_RS08850 at 1854.210 kb on - strand, within ABID97_RS08850 at 1855.729 kb on + strand, within ABID97_RS08855 at 1856.005 kb on + strand, within ABID97_RS08855 at 1856.006 kb on - strand, within ABID97_RS08855 at 1856.062 kb on + strand, within ABID97_RS08855 at 1856.063 kb on - strand, within ABID97_RS08855 at 1856.111 kb on - strand, within ABID97_RS08855 at 1856.120 kb on - strand, within ABID97_RS08855
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 1,852,667 + ABID97_RS08840 0.64 -2.2 1,852,764 - ABID97_RS08840 0.72 -0.2 1,852,764 - ABID97_RS08840 0.72 +0.6 1,852,904 + ABID97_RS08840 0.82 +0.2 1,852,905 - +0.5 1,853,251 + ABID97_RS08845 0.24 -2.4 1,853,308 + ABID97_RS08845 0.36 +1.3 1,853,470 + ABID97_RS08845 0.69 +0.4 1,853,470 + ABID97_RS08845 0.69 +0.3 1,853,620 + +0.6 1,853,620 + -0.6 1,854,134 + ABID97_RS08850 0.31 -0.6 1,854,135 - ABID97_RS08850 0.31 +0.6 1,854,135 - ABID97_RS08850 0.31 -0.0 1,854,185 + ABID97_RS08850 0.34 +0.1 1,854,210 - ABID97_RS08850 0.35 +1.4 1,855,729 + ABID97_RS08855 0.40 +1.0 1,856,005 + ABID97_RS08855 0.63 +1.8 1,856,006 - ABID97_RS08855 0.63 +0.5 1,856,062 + ABID97_RS08855 0.68 -0.4 1,856,063 - ABID97_RS08855 0.68 +0.8 1,856,111 - ABID97_RS08855 0.72 -2.2 1,856,120 - ABID97_RS08855 0.73 -0.3
Or see this region's nucleotide sequence