Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03450 and ABID97_RS03455 are separated by 82 nucleotides ABID97_RS03455 and ABID97_RS03460 are separated by 0 nucleotides ABID97_RS03460 and ABID97_RS03465 are separated by 104 nucleotides ABID97_RS03465 and ABID97_RS03470 are separated by 215 nucleotides
ABID97_RS03450: ABID97_RS03450 - homocysteine S-methyltransferase family protein, at 701,892 to 702,938
_RS03450
ABID97_RS03455: ABID97_RS03455 - SH3 domain-containing protein, at 703,021 to 703,839
_RS03455
ABID97_RS03460: ABID97_RS03460 - LysR family transcriptional regulator, at 703,840 to 704,757
_RS03460
ABID97_RS03465: ABID97_RS03465 - PACE efflux transporter, at 704,862 to 705,317
_RS03465
ABID97_RS03470: ABID97_RS03470 - methionine synthase, at 705,533 to 708,247
_RS03470
Position (kb) 703
704
705 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 703.027 kb on + strand at 703.027 kb on + strand at 703.027 kb on + strand at 703.027 kb on + strand at 703.028 kb on - strand at 703.028 kb on - strand at 703.151 kb on - strand, within ABID97_RS03455 at 703.279 kb on + strand, within ABID97_RS03455 at 703.280 kb on - strand, within ABID97_RS03455 at 703.280 kb on - strand, within ABID97_RS03455 at 703.280 kb on - strand, within ABID97_RS03455 at 703.280 kb on - strand, within ABID97_RS03455 at 703.316 kb on - strand, within ABID97_RS03455 at 703.364 kb on - strand, within ABID97_RS03455 at 703.364 kb on - strand, within ABID97_RS03455 at 703.376 kb on - strand, within ABID97_RS03455 at 703.376 kb on - strand, within ABID97_RS03455 at 703.376 kb on - strand, within ABID97_RS03455 at 703.378 kb on + strand, within ABID97_RS03455 at 703.379 kb on - strand, within ABID97_RS03455 at 703.379 kb on - strand, within ABID97_RS03455 at 703.396 kb on + strand, within ABID97_RS03455 at 703.837 kb on + strand at 703.837 kb on + strand at 703.838 kb on - strand at 703.841 kb on + strand at 703.841 kb on + strand at 703.842 kb on - strand at 704.403 kb on - strand, within ABID97_RS03460 at 704.644 kb on + strand, within ABID97_RS03460 at 704.645 kb on - strand, within ABID97_RS03460 at 704.804 kb on - strand at 704.889 kb on + strand at 704.889 kb on + strand at 704.889 kb on + strand at 704.889 kb on + strand at 704.889 kb on + strand at 704.889 kb on + strand at 704.889 kb on + strand at 704.889 kb on + strand at 704.890 kb on - strand at 704.890 kb on - strand at 704.890 kb on - strand at 704.890 kb on - strand at 704.890 kb on - strand at 704.890 kb on - strand at 704.890 kb on - strand at 705.219 kb on + strand, within ABID97_RS03465 at 705.219 kb on + strand, within ABID97_RS03465
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 703,027 + +0.4 703,027 + +0.3 703,027 + -1.5 703,027 + +0.2 703,028 - -0.2 703,028 - +0.8 703,151 - ABID97_RS03455 0.16 -0.4 703,279 + ABID97_RS03455 0.32 -0.0 703,280 - ABID97_RS03455 0.32 +0.7 703,280 - ABID97_RS03455 0.32 +0.1 703,280 - ABID97_RS03455 0.32 -2.0 703,280 - ABID97_RS03455 0.32 -0.7 703,316 - ABID97_RS03455 0.36 +0.6 703,364 - ABID97_RS03455 0.42 +0.2 703,364 - ABID97_RS03455 0.42 -3.3 703,376 - ABID97_RS03455 0.43 -1.9 703,376 - ABID97_RS03455 0.43 +0.7 703,376 - ABID97_RS03455 0.43 -1.5 703,378 + ABID97_RS03455 0.44 +0.2 703,379 - ABID97_RS03455 0.44 -1.1 703,379 - ABID97_RS03455 0.44 -1.3 703,396 + ABID97_RS03455 0.46 +0.1 703,837 + -0.4 703,837 + +0.1 703,838 - -0.0 703,841 + +0.4 703,841 + -1.7 703,842 - -0.6 704,403 - ABID97_RS03460 0.61 +0.2 704,644 + ABID97_RS03460 0.88 +0.6 704,645 - ABID97_RS03460 0.88 +0.3 704,804 - +0.6 704,889 + -3.0 704,889 + -0.9 704,889 + -0.2 704,889 + +0.0 704,889 + +0.3 704,889 + +1.7 704,889 + +1.4 704,889 + -0.0 704,890 - -2.7 704,890 - +0.4 704,890 - -0.3 704,890 - +2.1 704,890 - -0.5 704,890 - +0.1 704,890 - -1.5 705,219 + ABID97_RS03465 0.78 +0.4 705,219 + ABID97_RS03465 0.78 +0.0
Or see this region's nucleotide sequence