Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02395

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02390 and ABID97_RS02395 are separated by 11 nucleotidesABID97_RS02395 and ABID97_RS02400 are separated by 105 nucleotidesABID97_RS02400 and ABID97_RS02405 are separated by 79 nucleotides ABID97_RS02390: ABID97_RS02390 - CYTH and CHAD domain-containing protein, at 480,327 to 481,907 _RS02390 ABID97_RS02395: ABID97_RS02395 - amidase family protein, at 481,919 to 483,307 _RS02395 ABID97_RS02400: ABID97_RS02400 - VOC family protein, at 483,413 to 483,835 _RS02400 ABID97_RS02405: ABID97_RS02405 - pirin family protein, at 483,915 to 485,075 _RS02405 Position (kb) 481 482 483 484Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 481.804 kb on + strandat 481.805 kb on - strandat 481.805 kb on - strandat 481.805 kb on - strandat 481.883 kb on + strandat 481.883 kb on + strandat 481.884 kb on - strandat 481.884 kb on - strandat 481.884 kb on - strandat 482.363 kb on + strand, within ABID97_RS02395at 482.363 kb on + strand, within ABID97_RS02395at 482.364 kb on - strand, within ABID97_RS02395at 482.364 kb on - strand, within ABID97_RS02395at 482.364 kb on - strand, within ABID97_RS02395at 482.364 kb on - strand, within ABID97_RS02395at 482.516 kb on + strand, within ABID97_RS02395at 482.517 kb on - strand, within ABID97_RS02395at 482.891 kb on + strand, within ABID97_RS02395at 482.891 kb on + strand, within ABID97_RS02395at 482.891 kb on + strand, within ABID97_RS02395at 482.891 kb on + strand, within ABID97_RS02395at 482.892 kb on - strand, within ABID97_RS02395at 482.892 kb on - strand, within ABID97_RS02395at 482.892 kb on - strand, within ABID97_RS02395at 482.892 kb on - strand, within ABID97_RS02395at 482.892 kb on - strand, within ABID97_RS02395at 482.892 kb on - strand, within ABID97_RS02395at 482.892 kb on - strand, within ABID97_RS02395at 483.036 kb on + strand, within ABID97_RS02395at 483.036 kb on + strand, within ABID97_RS02395at 483.341 kb on - strandat 483.493 kb on + strand, within ABID97_RS02400at 483.493 kb on + strand, within ABID97_RS02400at 483.493 kb on + strand, within ABID97_RS02400at 483.493 kb on + strand, within ABID97_RS02400at 483.493 kb on + strand, within ABID97_RS02400at 483.494 kb on - strand, within ABID97_RS02400at 483.494 kb on - strand, within ABID97_RS02400at 483.494 kb on - strand, within ABID97_RS02400at 483.494 kb on - strand, within ABID97_RS02400at 483.494 kb on - strand, within ABID97_RS02400at 483.494 kb on - strand, within ABID97_RS02400at 483.494 kb on - strand, within ABID97_RS02400at 483.735 kb on - strand, within ABID97_RS02400at 483.746 kb on + strand, within ABID97_RS02400at 483.746 kb on + strand, within ABID97_RS02400at 483.746 kb on + strand, within ABID97_RS02400at 483.747 kb on - strand, within ABID97_RS02400at 483.747 kb on - strand, within ABID97_RS02400at 483.794 kb on + strandat 483.794 kb on + strandat 483.794 kb on + strandat 483.794 kb on + strandat 483.794 kb on + strandat 483.794 kb on + strandat 483.794 kb on + strandat 483.794 kb on + strandat 483.794 kb on + strandat 483.794 kb on + strandat 483.794 kb on + strandat 483.794 kb on + strandat 483.794 kb on + strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.795 kb on - strandat 483.935 kb on + strandat 483.989 kb on + strandat 483.989 kb on + strandat 483.990 kb on - strandat 484.001 kb on + strandat 484.001 kb on + strandat 484.001 kb on + strandat 484.001 kb on + strandat 484.001 kb on + strandat 484.002 kb on - strandat 484.002 kb on - strandat 484.101 kb on + strand, within ABID97_RS02405at 484.101 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.209 kb on + strand, within ABID97_RS02405at 484.210 kb on - strand, within ABID97_RS02405at 484.210 kb on - strand, within ABID97_RS02405at 484.210 kb on - strand, within ABID97_RS02405at 484.210 kb on - strand, within ABID97_RS02405at 484.210 kb on - strand, within ABID97_RS02405at 484.210 kb on - strand, within ABID97_RS02405at 484.291 kb on + strand, within ABID97_RS02405at 484.291 kb on + strand, within ABID97_RS02405at 484.291 kb on + strand, within ABID97_RS02405at 484.291 kb on + strand, within ABID97_RS02405at 484.291 kb on + strand, within ABID97_RS02405at 484.292 kb on - strand, within ABID97_RS02405at 484.292 kb on - strand, within ABID97_RS02405at 484.292 kb on - strand, within ABID97_RS02405

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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481,804 + -0.4
481,805 - +0.9
481,805 - +0.3
481,805 - +0.3
481,883 + +1.2
481,883 + -0.7
481,884 - -0.7
481,884 - +0.4
481,884 - -0.5
482,363 + ABID97_RS02395 0.32 -1.5
482,363 + ABID97_RS02395 0.32 +0.0
482,364 - ABID97_RS02395 0.32 -2.2
482,364 - ABID97_RS02395 0.32 +0.1
482,364 - ABID97_RS02395 0.32 -0.0
482,364 - ABID97_RS02395 0.32 -0.2
482,516 + ABID97_RS02395 0.43 -2.0
482,517 - ABID97_RS02395 0.43 -0.3
482,891 + ABID97_RS02395 0.70 +0.0
482,891 + ABID97_RS02395 0.70 -0.0
482,891 + ABID97_RS02395 0.70 -0.2
482,891 + ABID97_RS02395 0.70 +1.6
482,892 - ABID97_RS02395 0.70 -0.6
482,892 - ABID97_RS02395 0.70 +1.2
482,892 - ABID97_RS02395 0.70 -1.8
482,892 - ABID97_RS02395 0.70 -0.6
482,892 - ABID97_RS02395 0.70 +0.1
482,892 - ABID97_RS02395 0.70 +0.3
482,892 - ABID97_RS02395 0.70 +0.1
483,036 + ABID97_RS02395 0.80 -0.2
483,036 + ABID97_RS02395 0.80 -0.1
483,341 - -0.0
483,493 + ABID97_RS02400 0.19 -0.8
483,493 + ABID97_RS02400 0.19 -0.2
483,493 + ABID97_RS02400 0.19 +0.3
483,493 + ABID97_RS02400 0.19 +1.6
483,493 + ABID97_RS02400 0.19 -0.0
483,494 - ABID97_RS02400 0.19 -0.2
483,494 - ABID97_RS02400 0.19 +0.8
483,494 - ABID97_RS02400 0.19 -0.0
483,494 - ABID97_RS02400 0.19 -1.1
483,494 - ABID97_RS02400 0.19 -0.4
483,494 - ABID97_RS02400 0.19 +0.1
483,494 - ABID97_RS02400 0.19 -0.4
483,735 - ABID97_RS02400 0.76 -0.4
483,746 + ABID97_RS02400 0.79 +0.2
483,746 + ABID97_RS02400 0.79 -0.6
483,746 + ABID97_RS02400 0.79 -1.2
483,747 - ABID97_RS02400 0.79 +0.2
483,747 - ABID97_RS02400 0.79 +2.0
483,794 + +0.6
483,794 + +0.9
483,794 + -0.6
483,794 + -1.6
483,794 + +1.7
483,794 + +0.5
483,794 + -0.7
483,794 + +0.3
483,794 + -0.7
483,794 + -0.7
483,794 + +0.9
483,794 + +0.1
483,794 + +1.4
483,795 - -0.1
483,795 - -2.6
483,795 - -1.5
483,795 - +1.0
483,795 - +0.3
483,795 - -0.3
483,795 - -0.4
483,795 - +0.5
483,795 - -0.5
483,795 - +0.1
483,795 - -0.3
483,795 - +0.5
483,795 - -1.0
483,795 - +0.4
483,795 - -0.4
483,795 - +1.3
483,795 - +0.1
483,795 - -2.2
483,935 + -0.8
483,989 + -4.7
483,989 + +0.8
483,990 - -0.7
484,001 + -0.2
484,001 + -1.7
484,001 + -2.8
484,001 + +1.8
484,001 + +0.3
484,002 - -0.9
484,002 - +0.4
484,101 + ABID97_RS02405 0.16 -0.1
484,101 + ABID97_RS02405 0.16 -0.8
484,209 + ABID97_RS02405 0.25 +0.5
484,209 + ABID97_RS02405 0.25 +0.1
484,209 + ABID97_RS02405 0.25 -0.0
484,209 + ABID97_RS02405 0.25 +0.2
484,209 + ABID97_RS02405 0.25 +1.3
484,209 + ABID97_RS02405 0.25 +1.8
484,209 + ABID97_RS02405 0.25 -0.6
484,209 + ABID97_RS02405 0.25 +0.3
484,210 - ABID97_RS02405 0.25 -0.2
484,210 - ABID97_RS02405 0.25 -1.1
484,210 - ABID97_RS02405 0.25 -0.5
484,210 - ABID97_RS02405 0.25 -0.3
484,210 - ABID97_RS02405 0.25 +0.1
484,210 - ABID97_RS02405 0.25 -3.0
484,291 + ABID97_RS02405 0.32 +0.7
484,291 + ABID97_RS02405 0.32 -0.3
484,291 + ABID97_RS02405 0.32 -0.5
484,291 + ABID97_RS02405 0.32 -0.0
484,291 + ABID97_RS02405 0.32 -3.0
484,292 - ABID97_RS02405 0.32 +0.0
484,292 - ABID97_RS02405 0.32 -0.1
484,292 - ABID97_RS02405 0.32 +0.4

Or see this region's nucleotide sequence