Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00830 and ABID97_RS00835 are separated by 63 nucleotides ABID97_RS00835 and ABID97_RS00840 are separated by 220 nucleotides ABID97_RS00840 and ABID97_RS00845 are separated by 91 nucleotides ABID97_RS00845 and ABID97_RS00850 overlap by 4 nucleotides
ABID97_RS00830: ABID97_RS00830 - peptidoglycan-binding protein LysM, at 164,764 to 165,225
_RS00830
ABID97_RS00835: ABID97_RS00835 - rhodanese-like domain-containing protein, at 165,289 to 165,702
_RS00835
ABID97_RS00840: ABID97_RS00840 - TRAP transporter substrate-binding protein, at 165,923 to 167,038
_RS00840
ABID97_RS00845: ABID97_RS00845 - TRAP transporter small permease subunit, at 167,130 to 167,750
_RS00845
ABID97_RS00850: ABID97_RS00850 - TRAP transporter large permease subunit, at 167,747 to 169,714
_RS00850
Position (kb) 165
166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 165.067 kb on + strand, within ABID97_RS00830 at 165.068 kb on - strand, within ABID97_RS00830 at 165.068 kb on - strand, within ABID97_RS00830 at 165.116 kb on - strand, within ABID97_RS00830 at 165.116 kb on - strand, within ABID97_RS00830 at 165.136 kb on + strand, within ABID97_RS00830 at 165.137 kb on - strand, within ABID97_RS00830 at 165.191 kb on - strand at 165.389 kb on + strand, within ABID97_RS00835 at 165.389 kb on + strand, within ABID97_RS00835 at 165.390 kb on - strand, within ABID97_RS00835 at 165.675 kb on - strand at 165.703 kb on - strand at 165.866 kb on - strand at 165.907 kb on + strand at 165.908 kb on - strand at 166.224 kb on - strand, within ABID97_RS00840 at 166.313 kb on + strand, within ABID97_RS00840 at 166.314 kb on - strand, within ABID97_RS00840 at 166.346 kb on + strand, within ABID97_RS00840 at 166.346 kb on + strand, within ABID97_RS00840 at 166.346 kb on + strand, within ABID97_RS00840 at 166.347 kb on - strand, within ABID97_RS00840 at 166.376 kb on + strand, within ABID97_RS00840 at 166.377 kb on - strand, within ABID97_RS00840 at 166.383 kb on - strand, within ABID97_RS00840 at 166.796 kb on + strand, within ABID97_RS00840 at 166.797 kb on - strand, within ABID97_RS00840 at 166.977 kb on - strand at 166.977 kb on - strand at 167.000 kb on + strand at 167.000 kb on + strand at 167.000 kb on + strand at 167.010 kb on - strand at 167.241 kb on + strand, within ABID97_RS00845 at 167.242 kb on - strand, within ABID97_RS00845 at 167.293 kb on - strand, within ABID97_RS00845 at 167.365 kb on - strand, within ABID97_RS00845 at 167.365 kb on - strand, within ABID97_RS00845 at 167.412 kb on + strand, within ABID97_RS00845 at 167.412 kb on + strand, within ABID97_RS00845 at 167.412 kb on + strand, within ABID97_RS00845 at 167.466 kb on + strand, within ABID97_RS00845 at 167.466 kb on + strand, within ABID97_RS00845 at 167.466 kb on + strand, within ABID97_RS00845 at 167.467 kb on - strand, within ABID97_RS00845 at 167.467 kb on - strand, within ABID97_RS00845 at 167.952 kb on - strand, within ABID97_RS00850 at 168.000 kb on - strand, within ABID97_RS00850
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 165,067 + ABID97_RS00830 0.66 -0.3 165,068 - ABID97_RS00830 0.66 +1.5 165,068 - ABID97_RS00830 0.66 -1.5 165,116 - ABID97_RS00830 0.76 -0.0 165,116 - ABID97_RS00830 0.76 +2.6 165,136 + ABID97_RS00830 0.81 -0.6 165,137 - ABID97_RS00830 0.81 -0.6 165,191 - -1.7 165,389 + ABID97_RS00835 0.24 -0.8 165,389 + ABID97_RS00835 0.24 -0.4 165,390 - ABID97_RS00835 0.24 -0.6 165,675 - -2.1 165,703 - +2.0 165,866 - +0.4 165,907 + -0.9 165,908 - -0.5 166,224 - ABID97_RS00840 0.27 -1.7 166,313 + ABID97_RS00840 0.35 +1.4 166,314 - ABID97_RS00840 0.35 +1.0 166,346 + ABID97_RS00840 0.38 +0.6 166,346 + ABID97_RS00840 0.38 -0.4 166,346 + ABID97_RS00840 0.38 +1.0 166,347 - ABID97_RS00840 0.38 -0.6 166,376 + ABID97_RS00840 0.41 -1.8 166,377 - ABID97_RS00840 0.41 +0.4 166,383 - ABID97_RS00840 0.41 +0.0 166,796 + ABID97_RS00840 0.78 +0.2 166,797 - ABID97_RS00840 0.78 +0.8 166,977 - -2.6 166,977 - -0.5 167,000 + +0.2 167,000 + -2.7 167,000 + -0.3 167,010 - +0.7 167,241 + ABID97_RS00845 0.18 +1.1 167,242 - ABID97_RS00845 0.18 +0.1 167,293 - ABID97_RS00845 0.26 -2.5 167,365 - ABID97_RS00845 0.38 -0.6 167,365 - ABID97_RS00845 0.38 +0.4 167,412 + ABID97_RS00845 0.45 -1.2 167,412 + ABID97_RS00845 0.45 +0.1 167,412 + ABID97_RS00845 0.45 +0.6 167,466 + ABID97_RS00845 0.54 -0.8 167,466 + ABID97_RS00845 0.54 -0.3 167,466 + ABID97_RS00845 0.54 -0.2 167,467 - ABID97_RS00845 0.54 -3.4 167,467 - ABID97_RS00845 0.54 -0.1 167,952 - ABID97_RS00850 0.10 -3.5 168,000 - ABID97_RS00850 0.13 -0.4
Or see this region's nucleotide sequence