Strain Fitness in Serratia liquefaciens MT49 around IAI46_24670

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24665 and IAI46_24670 are separated by 63 nucleotidesIAI46_24670 and IAI46_24675 are separated by 62 nucleotidesIAI46_24675 and IAI46_24680 are separated by 133 nucleotides IAI46_24665: IAI46_24665 - envelope stress sensor histidine kinase CpxA, at 5,266,239 to 5,267,612 _24665 IAI46_24670: IAI46_24670 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 5,267,676 to 5,268,149 _24670 IAI46_24675: IAI46_24675 - CHAD domain-containing protein, at 5,268,212 to 5,268,961 _24675 IAI46_24680: IAI46_24680 - DUF3313 domain-containing protein, at 5,269,095 to 5,269,766 _24680 Position (kb) 5267 5268 5269Strain fitness (log2 ratio) -2 -1 0 1at 5266.754 kb on + strand, within IAI46_24665at 5266.755 kb on - strand, within IAI46_24665at 5266.755 kb on - strand, within IAI46_24665at 5266.781 kb on - strand, within IAI46_24665at 5266.976 kb on + strand, within IAI46_24665at 5267.114 kb on - strand, within IAI46_24665at 5267.271 kb on + strand, within IAI46_24665at 5267.318 kb on + strand, within IAI46_24665at 5267.319 kb on - strand, within IAI46_24665at 5267.438 kb on - strand, within IAI46_24665at 5267.451 kb on + strand, within IAI46_24665at 5267.512 kb on + strandat 5267.512 kb on + strandat 5267.593 kb on + strandat 5267.613 kb on + strandat 5267.618 kb on + strandat 5267.618 kb on + strandat 5267.618 kb on + strandat 5267.619 kb on - strandat 5267.619 kb on - strandat 5267.619 kb on - strandat 5267.674 kb on - strandat 5267.674 kb on - strandat 5267.693 kb on - strandat 5267.726 kb on + strand, within IAI46_24670at 5267.747 kb on + strand, within IAI46_24670at 5267.798 kb on + strand, within IAI46_24670at 5267.799 kb on - strand, within IAI46_24670at 5267.799 kb on - strand, within IAI46_24670at 5267.826 kb on + strand, within IAI46_24670at 5267.827 kb on - strand, within IAI46_24670at 5267.844 kb on - strand, within IAI46_24670at 5267.863 kb on - strand, within IAI46_24670at 5267.961 kb on + strand, within IAI46_24670at 5267.961 kb on + strand, within IAI46_24670at 5267.962 kb on - strand, within IAI46_24670at 5267.962 kb on - strand, within IAI46_24670at 5267.962 kb on - strand, within IAI46_24670at 5267.962 kb on - strand, within IAI46_24670at 5268.099 kb on + strand, within IAI46_24670at 5268.124 kb on - strandat 5268.124 kb on - strandat 5268.141 kb on - strandat 5268.147 kb on + strandat 5268.147 kb on + strandat 5268.178 kb on + strandat 5268.179 kb on - strandat 5268.179 kb on - strandat 5268.182 kb on - strandat 5268.182 kb on - strandat 5268.224 kb on - strandat 5268.224 kb on - strandat 5268.232 kb on + strandat 5268.243 kb on + strandat 5268.243 kb on + strandat 5268.244 kb on - strandat 5268.244 kb on - strandat 5268.321 kb on + strand, within IAI46_24675at 5268.321 kb on + strand, within IAI46_24675at 5268.321 kb on + strand, within IAI46_24675at 5268.322 kb on - strand, within IAI46_24675at 5268.322 kb on - strand, within IAI46_24675at 5268.322 kb on - strand, within IAI46_24675at 5268.322 kb on - strand, within IAI46_24675at 5268.341 kb on - strand, within IAI46_24675at 5268.364 kb on - strand, within IAI46_24675at 5268.425 kb on - strand, within IAI46_24675at 5268.570 kb on + strand, within IAI46_24675at 5268.570 kb on + strand, within IAI46_24675at 5268.570 kb on + strand, within IAI46_24675at 5268.571 kb on - strand, within IAI46_24675at 5268.571 kb on - strand, within IAI46_24675at 5268.571 kb on - strand, within IAI46_24675at 5268.571 kb on - strand, within IAI46_24675at 5268.574 kb on + strand, within IAI46_24675at 5268.575 kb on - strand, within IAI46_24675at 5268.575 kb on - strand, within IAI46_24675at 5268.660 kb on + strand, within IAI46_24675at 5268.660 kb on + strand, within IAI46_24675at 5268.660 kb on + strand, within IAI46_24675at 5268.681 kb on + strand, within IAI46_24675at 5268.681 kb on + strand, within IAI46_24675at 5268.681 kb on + strand, within IAI46_24675at 5268.682 kb on - strand, within IAI46_24675at 5268.682 kb on - strand, within IAI46_24675at 5268.682 kb on - strand, within IAI46_24675at 5268.682 kb on - strand, within IAI46_24675at 5268.682 kb on - strand, within IAI46_24675at 5268.686 kb on + strand, within IAI46_24675at 5268.686 kb on + strand, within IAI46_24675at 5268.687 kb on - strand, within IAI46_24675at 5268.687 kb on - strand, within IAI46_24675at 5268.728 kb on + strand, within IAI46_24675at 5268.728 kb on + strand, within IAI46_24675at 5268.729 kb on - strand, within IAI46_24675at 5268.729 kb on - strand, within IAI46_24675at 5268.729 kb on - strand, within IAI46_24675at 5268.729 kb on - strand, within IAI46_24675at 5268.743 kb on + strand, within IAI46_24675at 5268.744 kb on - strand, within IAI46_24675at 5268.959 kb on + strandat 5268.960 kb on - strandat 5268.973 kb on + strandat 5268.973 kb on + strandat 5268.981 kb on + strandat 5268.981 kb on + strandat 5268.981 kb on + strandat 5268.981 kb on + strandat 5268.981 kb on + strandat 5268.982 kb on - strandat 5269.045 kb on + strandat 5269.048 kb on + strandat 5269.048 kb on + strandat 5269.048 kb on + strandat 5269.048 kb on + strandat 5269.048 kb on + strandat 5269.048 kb on + strandat 5269.048 kb on + strandat 5269.048 kb on + strandat 5269.049 kb on - strandat 5269.049 kb on - strandat 5269.049 kb on - strandat 5269.049 kb on - strandat 5269.049 kb on - strandat 5269.049 kb on - strandat 5269.049 kb on - strandat 5269.049 kb on - strandat 5269.053 kb on + strandat 5269.053 kb on + strandat 5269.053 kb on + strandat 5269.054 kb on - strandat 5269.054 kb on - strandat 5269.068 kb on + strandat 5269.084 kb on + strandat 5269.147 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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5,266,754 + IAI46_24665 0.37 +1.7
5,266,755 - IAI46_24665 0.38 -0.2
5,266,755 - IAI46_24665 0.38 -2.2
5,266,781 - IAI46_24665 0.39 +0.0
5,266,976 + IAI46_24665 0.54 -0.2
5,267,114 - IAI46_24665 0.64 -0.5
5,267,271 + IAI46_24665 0.75 +0.7
5,267,318 + IAI46_24665 0.79 -0.6
5,267,319 - IAI46_24665 0.79 +0.4
5,267,438 - IAI46_24665 0.87 +0.0
5,267,451 + IAI46_24665 0.88 -2.6
5,267,512 + +0.9
5,267,512 + +0.5
5,267,593 + +0.3
5,267,613 + +1.5
5,267,618 + +0.3
5,267,618 + +0.5
5,267,618 + +0.1
5,267,619 - -1.1
5,267,619 - +0.7
5,267,619 - -0.6
5,267,674 - -0.6
5,267,674 - +0.6
5,267,693 - -1.9
5,267,726 + IAI46_24670 0.11 -0.9
5,267,747 + IAI46_24670 0.15 +0.4
5,267,798 + IAI46_24670 0.26 -0.5
5,267,799 - IAI46_24670 0.26 +0.4
5,267,799 - IAI46_24670 0.26 -1.0
5,267,826 + IAI46_24670 0.32 +0.1
5,267,827 - IAI46_24670 0.32 -1.5
5,267,844 - IAI46_24670 0.35 +0.1
5,267,863 - IAI46_24670 0.39 +1.3
5,267,961 + IAI46_24670 0.60 -0.2
5,267,961 + IAI46_24670 0.60 +0.7
5,267,962 - IAI46_24670 0.60 +0.0
5,267,962 - IAI46_24670 0.60 -0.0
5,267,962 - IAI46_24670 0.60 +0.4
5,267,962 - IAI46_24670 0.60 +0.1
5,268,099 + IAI46_24670 0.89 +0.6
5,268,124 - +0.5
5,268,124 - +0.5
5,268,141 - -1.1
5,268,147 + +0.2
5,268,147 + +0.2
5,268,178 + +0.5
5,268,179 - -0.8
5,268,179 - +0.5
5,268,182 - -1.3
5,268,182 - +0.1
5,268,224 - +0.2
5,268,224 - -0.4
5,268,232 + -1.6
5,268,243 + +0.3
5,268,243 + -0.5
5,268,244 - +1.1
5,268,244 - -0.4
5,268,321 + IAI46_24675 0.15 +0.3
5,268,321 + IAI46_24675 0.15 +0.3
5,268,321 + IAI46_24675 0.15 -0.2
5,268,322 - IAI46_24675 0.15 -1.3
5,268,322 - IAI46_24675 0.15 +0.9
5,268,322 - IAI46_24675 0.15 +0.4
5,268,322 - IAI46_24675 0.15 -0.3
5,268,341 - IAI46_24675 0.17 +0.6
5,268,364 - IAI46_24675 0.20 -0.6
5,268,425 - IAI46_24675 0.28 -0.2
5,268,570 + IAI46_24675 0.48 -0.3
5,268,570 + IAI46_24675 0.48 -0.5
5,268,570 + IAI46_24675 0.48 -0.2
5,268,571 - IAI46_24675 0.48 -0.5
5,268,571 - IAI46_24675 0.48 +0.0
5,268,571 - IAI46_24675 0.48 +0.4
5,268,571 - IAI46_24675 0.48 +0.4
5,268,574 + IAI46_24675 0.48 -0.8
5,268,575 - IAI46_24675 0.48 -1.9
5,268,575 - IAI46_24675 0.48 +0.6
5,268,660 + IAI46_24675 0.60 -0.4
5,268,660 + IAI46_24675 0.60 +0.2
5,268,660 + IAI46_24675 0.60 +1.1
5,268,681 + IAI46_24675 0.63 -0.5
5,268,681 + IAI46_24675 0.63 -1.8
5,268,681 + IAI46_24675 0.63 +0.2
5,268,682 - IAI46_24675 0.63 +1.7
5,268,682 - IAI46_24675 0.63 +0.2
5,268,682 - IAI46_24675 0.63 +0.2
5,268,682 - IAI46_24675 0.63 +0.9
5,268,682 - IAI46_24675 0.63 -0.4
5,268,686 + IAI46_24675 0.63 +0.8
5,268,686 + IAI46_24675 0.63 +0.3
5,268,687 - IAI46_24675 0.63 -0.5
5,268,687 - IAI46_24675 0.63 +0.3
5,268,728 + IAI46_24675 0.69 -0.3
5,268,728 + IAI46_24675 0.69 -0.3
5,268,729 - IAI46_24675 0.69 +1.4
5,268,729 - IAI46_24675 0.69 +0.3
5,268,729 - IAI46_24675 0.69 -0.4
5,268,729 - IAI46_24675 0.69 +0.5
5,268,743 + IAI46_24675 0.71 +0.3
5,268,744 - IAI46_24675 0.71 +0.5
5,268,959 + +0.4
5,268,960 - -0.6
5,268,973 + +0.1
5,268,973 + -0.7
5,268,981 + +0.5
5,268,981 + -0.5
5,268,981 + -1.1
5,268,981 + +0.3
5,268,981 + -0.3
5,268,982 - +0.4
5,269,045 + +0.3
5,269,048 + +0.9
5,269,048 + +0.4
5,269,048 + -0.6
5,269,048 + +0.3
5,269,048 + -1.0
5,269,048 + -0.8
5,269,048 + +0.1
5,269,048 + -0.2
5,269,049 - +0.1
5,269,049 - -0.3
5,269,049 - +0.0
5,269,049 - +0.5
5,269,049 - -0.8
5,269,049 - +0.4
5,269,049 - -0.6
5,269,049 - -0.4
5,269,053 + -1.1
5,269,053 + +0.5
5,269,053 + +1.0
5,269,054 - -0.6
5,269,054 - -0.1
5,269,068 + +0.9
5,269,084 + -0.0
5,269,147 + +0.2

Or see this region's nucleotide sequence