Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_23675 and IAI46_23680 are separated by 2 nucleotides IAI46_23680 and IAI46_23685 overlap by 8 nucleotides IAI46_23685 and IAI46_23690 are separated by 56 nucleotides
IAI46_23675: IAI46_23675 - tryptophan--tRNA ligase, at 5,036,207 to 5,037,211
_23675
IAI46_23680: IAI46_23680 - phosphoglycolate phosphatase, at 5,037,214 to 5,037,912
_23680
IAI46_23685: IAI46_23685 - ribulose-phosphate 3-epimerase, at 5,037,905 to 5,038,582
_23685
IAI46_23690: IAI46_23690 - adenine-specific DNA-methyltransferase, at 5,038,639 to 5,039,451
_23690
Position (kb)
5037
5038
5039 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5036.913 kb on + strand, within IAI46_23675 at 5036.913 kb on + strand, within IAI46_23675 at 5036.914 kb on - strand, within IAI46_23675 at 5036.917 kb on + strand, within IAI46_23675 at 5036.917 kb on + strand, within IAI46_23675 at 5036.917 kb on + strand, within IAI46_23675 at 5036.918 kb on - strand, within IAI46_23675 at 5036.918 kb on - strand, within IAI46_23675 at 5036.918 kb on - strand, within IAI46_23675 at 5036.919 kb on + strand, within IAI46_23675 at 5036.919 kb on + strand, within IAI46_23675 at 5036.919 kb on + strand, within IAI46_23675 at 5036.919 kb on + strand, within IAI46_23675 at 5036.919 kb on + strand, within IAI46_23675 at 5036.920 kb on - strand, within IAI46_23675 at 5036.920 kb on - strand, within IAI46_23675 at 5036.920 kb on - strand, within IAI46_23675 at 5036.920 kb on - strand, within IAI46_23675 at 5036.947 kb on + strand, within IAI46_23675 at 5036.948 kb on - strand, within IAI46_23675 at 5036.948 kb on - strand, within IAI46_23675 at 5036.970 kb on - strand, within IAI46_23675 at 5036.970 kb on - strand, within IAI46_23675 at 5036.970 kb on - strand, within IAI46_23675 at 5037.035 kb on - strand, within IAI46_23675 at 5037.035 kb on - strand, within IAI46_23675 at 5037.096 kb on + strand, within IAI46_23675 at 5037.096 kb on + strand, within IAI46_23675 at 5037.150 kb on + strand at 5037.150 kb on + strand at 5037.150 kb on + strand at 5037.150 kb on + strand at 5037.150 kb on + strand at 5037.150 kb on + strand at 5037.151 kb on - strand at 5037.151 kb on - strand at 5037.151 kb on - strand at 5037.151 kb on - strand at 5037.151 kb on - strand at 5037.190 kb on + strand at 5037.191 kb on - strand at 5037.194 kb on + strand at 5037.195 kb on - strand at 5037.195 kb on - strand at 5037.195 kb on - strand at 5037.205 kb on + strand at 5037.205 kb on + strand at 5037.205 kb on + strand at 5037.205 kb on + strand at 5037.206 kb on - strand at 5037.216 kb on - strand at 5037.232 kb on + strand at 5037.232 kb on + strand at 5037.318 kb on - strand, within IAI46_23680 at 5037.321 kb on + strand, within IAI46_23680 at 5037.321 kb on + strand, within IAI46_23680 at 5037.324 kb on - strand, within IAI46_23680 at 5037.324 kb on - strand, within IAI46_23680 at 5037.329 kb on + strand, within IAI46_23680 at 5037.330 kb on - strand, within IAI46_23680 at 5037.330 kb on - strand, within IAI46_23680 at 5037.375 kb on + strand, within IAI46_23680 at 5037.375 kb on + strand, within IAI46_23680 at 5037.376 kb on - strand, within IAI46_23680 at 5037.492 kb on + strand, within IAI46_23680 at 5037.596 kb on - strand, within IAI46_23680 at 5037.659 kb on + strand, within IAI46_23680 at 5037.660 kb on - strand, within IAI46_23680 at 5037.660 kb on - strand, within IAI46_23680 at 5037.739 kb on + strand, within IAI46_23680 at 5037.739 kb on + strand, within IAI46_23680 at 5037.740 kb on - strand, within IAI46_23680 at 5037.823 kb on - strand, within IAI46_23680 at 5037.829 kb on - strand, within IAI46_23680 at 5038.209 kb on + strand, within IAI46_23685 at 5038.210 kb on - strand, within IAI46_23685 at 5038.236 kb on - strand, within IAI46_23685 at 5038.458 kb on + strand, within IAI46_23685 at 5038.487 kb on + strand, within IAI46_23685 at 5038.587 kb on + strand at 5038.615 kb on + strand at 5038.615 kb on + strand at 5038.617 kb on + strand at 5038.618 kb on - strand at 5038.618 kb on - strand at 5038.618 kb on - strand at 5039.006 kb on + strand, within IAI46_23690 at 5039.095 kb on - strand, within IAI46_23690 at 5039.115 kb on - strand, within IAI46_23690 at 5039.138 kb on + strand, within IAI46_23690 at 5039.151 kb on + strand, within IAI46_23690 at 5039.244 kb on + strand, within IAI46_23690 at 5039.264 kb on + strand, within IAI46_23690 at 5039.265 kb on - strand, within IAI46_23690 at 5039.265 kb on - strand, within IAI46_23690 at 5039.271 kb on + strand, within IAI46_23690 at 5039.274 kb on + strand, within IAI46_23690 at 5039.301 kb on + strand, within IAI46_23690 at 5039.303 kb on + strand, within IAI46_23690 at 5039.466 kb on - strand at 5039.470 kb on - strand at 5039.470 kb on - strand at 5039.475 kb on - strand at 5039.475 kb on - strand at 5039.531 kb on + strand at 5039.532 kb on - strand at 5039.552 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 5,036,913 + IAI46_23675 0.70 -0.3 5,036,913 + IAI46_23675 0.70 +0.5 5,036,914 - IAI46_23675 0.70 +2.1 5,036,917 + IAI46_23675 0.71 -1.6 5,036,917 + IAI46_23675 0.71 +0.7 5,036,917 + IAI46_23675 0.71 +1.4 5,036,918 - IAI46_23675 0.71 +0.0 5,036,918 - IAI46_23675 0.71 +0.6 5,036,918 - IAI46_23675 0.71 -0.6 5,036,919 + IAI46_23675 0.71 +0.8 5,036,919 + IAI46_23675 0.71 -0.8 5,036,919 + IAI46_23675 0.71 +1.1 5,036,919 + IAI46_23675 0.71 -0.5 5,036,919 + IAI46_23675 0.71 +0.5 5,036,920 - IAI46_23675 0.71 -0.6 5,036,920 - IAI46_23675 0.71 +1.6 5,036,920 - IAI46_23675 0.71 +0.4 5,036,920 - IAI46_23675 0.71 +0.7 5,036,947 + IAI46_23675 0.74 +0.8 5,036,948 - IAI46_23675 0.74 +0.4 5,036,948 - IAI46_23675 0.74 -1.2 5,036,970 - IAI46_23675 0.76 -0.1 5,036,970 - IAI46_23675 0.76 -0.5 5,036,970 - IAI46_23675 0.76 +0.0 5,037,035 - IAI46_23675 0.82 -0.5 5,037,035 - IAI46_23675 0.82 +1.3 5,037,096 + IAI46_23675 0.88 +0.5 5,037,096 + IAI46_23675 0.88 -0.4 5,037,150 + -0.2 5,037,150 + -0.3 5,037,150 + +0.1 5,037,150 + -0.8 5,037,150 + +0.2 5,037,150 + +0.4 5,037,151 - +0.0 5,037,151 - -0.1 5,037,151 - +0.5 5,037,151 - +1.4 5,037,151 - +1.1 5,037,190 + -0.1 5,037,191 - -0.6 5,037,194 + +0.3 5,037,195 - -0.6 5,037,195 - +0.2 5,037,195 - -0.2 5,037,205 + +0.1 5,037,205 + +0.2 5,037,205 + -0.1 5,037,205 + -0.8 5,037,206 - -0.2 5,037,216 - +0.9 5,037,232 + -1.3 5,037,232 + +0.4 5,037,318 - IAI46_23680 0.15 -1.1 5,037,321 + IAI46_23680 0.15 +0.6 5,037,321 + IAI46_23680 0.15 -0.6 5,037,324 - IAI46_23680 0.16 +0.2 5,037,324 - IAI46_23680 0.16 -0.6 5,037,329 + IAI46_23680 0.16 -0.2 5,037,330 - IAI46_23680 0.17 +0.6 5,037,330 - IAI46_23680 0.17 +0.3 5,037,375 + IAI46_23680 0.23 +0.5 5,037,375 + IAI46_23680 0.23 -0.6 5,037,376 - IAI46_23680 0.23 +0.5 5,037,492 + IAI46_23680 0.40 -0.7 5,037,596 - IAI46_23680 0.55 +0.7 5,037,659 + IAI46_23680 0.64 -0.7 5,037,660 - IAI46_23680 0.64 -0.0 5,037,660 - IAI46_23680 0.64 +1.8 5,037,739 + IAI46_23680 0.75 -2.6 5,037,739 + IAI46_23680 0.75 +0.1 5,037,740 - IAI46_23680 0.75 -0.5 5,037,823 - IAI46_23680 0.87 -0.0 5,037,829 - IAI46_23680 0.88 -0.5 5,038,209 + IAI46_23685 0.45 -0.2 5,038,210 - IAI46_23685 0.45 -2.2 5,038,236 - IAI46_23685 0.49 -1.0 5,038,458 + IAI46_23685 0.82 -0.6 5,038,487 + IAI46_23685 0.86 +1.6 5,038,587 + +0.4 5,038,615 + +1.5 5,038,615 + +1.9 5,038,617 + +0.8 5,038,618 - -0.5 5,038,618 - -1.4 5,038,618 - +0.9 5,039,006 + IAI46_23690 0.45 -0.2 5,039,095 - IAI46_23690 0.56 -0.2 5,039,115 - IAI46_23690 0.59 +0.4 5,039,138 + IAI46_23690 0.61 -0.5 5,039,151 + IAI46_23690 0.63 -0.5 5,039,244 + IAI46_23690 0.74 +0.4 5,039,264 + IAI46_23690 0.77 -0.6 5,039,265 - IAI46_23690 0.77 -0.8 5,039,265 - IAI46_23690 0.77 -0.2 5,039,271 + IAI46_23690 0.78 +0.4 5,039,274 + IAI46_23690 0.78 -0.5 5,039,301 + IAI46_23690 0.81 +0.4 5,039,303 + IAI46_23690 0.82 +0.4 5,039,466 - +0.4 5,039,470 - +0.4 5,039,470 - +0.0 5,039,475 - +0.6 5,039,475 - +1.0 5,039,531 + -0.8 5,039,532 - -0.6 5,039,552 - -0.0
Or see this region's nucleotide sequence