Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_23495 and IAI46_23500 are separated by 370 nucleotides IAI46_23500 and IAI46_23505 are separated by 59 nucleotides IAI46_23505 and IAI46_23510 are separated by 121 nucleotides IAI46_23510 and IAI46_23515 are separated by 14 nucleotides
IAI46_23495: IAI46_23495 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 4,999,348 to 5,000,181
_23495
IAI46_23500: IAI46_23500 - SlyX family protein, at 5,000,552 to 5,000,779
_23500
IAI46_23505: IAI46_23505 - peptidylprolyl isomerase, at 5,000,839 to 5,001,435
_23505
IAI46_23510: IAI46_23510 - YheV family putative metal-binding protein, at 5,001,557 to 5,001,760
_23510
IAI46_23515: IAI46_23515 - glutathione-regulated potassium-efflux system protein KefB, at 5,001,775 to 5,003,583
_23515
Position (kb) 5000
5001 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4999.610 kb on + strand, within IAI46_23495 at 4999.610 kb on + strand, within IAI46_23495 at 4999.617 kb on + strand, within IAI46_23495 at 4999.617 kb on + strand, within IAI46_23495 at 4999.658 kb on - strand, within IAI46_23495 at 4999.660 kb on + strand, within IAI46_23495 at 4999.660 kb on + strand, within IAI46_23495 at 4999.661 kb on - strand, within IAI46_23495 at 4999.661 kb on - strand, within IAI46_23495 at 4999.709 kb on - strand, within IAI46_23495 at 4999.715 kb on + strand, within IAI46_23495 at 4999.715 kb on + strand, within IAI46_23495 at 4999.716 kb on - strand, within IAI46_23495 at 4999.795 kb on - strand, within IAI46_23495 at 5000.016 kb on - strand, within IAI46_23495 at 5000.016 kb on - strand, within IAI46_23495 at 5000.094 kb on + strand, within IAI46_23495 at 5000.094 kb on + strand, within IAI46_23495 at 5000.167 kb on - strand at 5000.222 kb on + strand at 5000.223 kb on - strand at 5000.223 kb on - strand at 5000.226 kb on + strand at 5000.226 kb on + strand at 5000.226 kb on + strand at 5000.226 kb on + strand at 5000.227 kb on - strand at 5000.227 kb on - strand at 5000.243 kb on + strand at 5000.243 kb on + strand at 5000.243 kb on + strand at 5000.243 kb on + strand at 5000.243 kb on + strand at 5000.243 kb on + strand at 5000.244 kb on - strand at 5000.244 kb on - strand at 5000.244 kb on - strand at 5000.245 kb on + strand at 5000.245 kb on + strand at 5000.245 kb on + strand at 5000.245 kb on + strand at 5000.245 kb on + strand at 5000.245 kb on + strand at 5000.245 kb on + strand at 5000.245 kb on + strand at 5000.245 kb on + strand at 5000.245 kb on + strand at 5000.245 kb on + strand at 5000.246 kb on - strand at 5000.246 kb on - strand at 5000.246 kb on - strand at 5000.246 kb on - strand at 5000.246 kb on - strand at 5000.246 kb on - strand at 5000.246 kb on - strand at 5000.312 kb on + strand at 5000.313 kb on - strand at 5000.348 kb on + strand at 5000.348 kb on + strand at 5000.348 kb on + strand at 5000.384 kb on + strand at 5000.506 kb on + strand at 5000.512 kb on - strand at 5000.512 kb on - strand at 5000.512 kb on - strand at 5000.545 kb on + strand at 5000.545 kb on + strand at 5000.545 kb on + strand at 5000.545 kb on + strand at 5000.546 kb on - strand at 5000.546 kb on - strand at 5000.630 kb on - strand, within IAI46_23500 at 5000.780 kb on + strand at 5000.780 kb on + strand at 5000.780 kb on + strand at 5000.781 kb on - strand at 5001.009 kb on + strand, within IAI46_23505 at 5001.034 kb on + strand, within IAI46_23505 at 5001.035 kb on - strand, within IAI46_23505 at 5001.085 kb on + strand, within IAI46_23505 at 5001.085 kb on + strand, within IAI46_23505 at 5001.183 kb on + strand, within IAI46_23505 at 5001.183 kb on + strand, within IAI46_23505 at 5001.184 kb on - strand, within IAI46_23505 at 5001.335 kb on + strand, within IAI46_23505 at 5001.387 kb on + strand at 5001.391 kb on + strand at 5001.391 kb on + strand at 5001.391 kb on + strand at 5001.392 kb on - strand at 5001.398 kb on + strand at 5001.399 kb on - strand at 5001.399 kb on - strand at 5001.399 kb on - strand at 5001.427 kb on + strand at 5001.438 kb on + strand at 5001.445 kb on + strand at 5001.455 kb on + strand at 5001.455 kb on + strand at 5001.455 kb on + strand at 5001.456 kb on - strand at 5001.456 kb on - strand at 5001.456 kb on - strand at 5001.503 kb on - strand at 5001.558 kb on + strand at 5001.697 kb on + strand, within IAI46_23510 at 5001.709 kb on + strand, within IAI46_23510 at 5001.710 kb on - strand, within IAI46_23510 at 5001.776 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 4,999,610 + IAI46_23495 0.31 +1.8 4,999,610 + IAI46_23495 0.31 -0.6 4,999,617 + IAI46_23495 0.32 -0.2 4,999,617 + IAI46_23495 0.32 -0.4 4,999,658 - IAI46_23495 0.37 -0.5 4,999,660 + IAI46_23495 0.37 -0.6 4,999,660 + IAI46_23495 0.37 +1.1 4,999,661 - IAI46_23495 0.38 -1.1 4,999,661 - IAI46_23495 0.38 +0.9 4,999,709 - IAI46_23495 0.43 +0.4 4,999,715 + IAI46_23495 0.44 -0.6 4,999,715 + IAI46_23495 0.44 +0.1 4,999,716 - IAI46_23495 0.44 +0.6 4,999,795 - IAI46_23495 0.54 -0.4 5,000,016 - IAI46_23495 0.80 -2.1 5,000,016 - IAI46_23495 0.80 -0.0 5,000,094 + IAI46_23495 0.89 -0.2 5,000,094 + IAI46_23495 0.89 -0.4 5,000,167 - -0.2 5,000,222 + +0.6 5,000,223 - -0.5 5,000,223 - +0.3 5,000,226 + +0.7 5,000,226 + +0.3 5,000,226 + -0.2 5,000,226 + -0.3 5,000,227 - +0.6 5,000,227 - -1.5 5,000,243 + -0.4 5,000,243 + -1.7 5,000,243 + +0.7 5,000,243 + +1.1 5,000,243 + +0.3 5,000,243 + +1.0 5,000,244 - +0.7 5,000,244 - +0.5 5,000,244 - +2.1 5,000,245 + +0.1 5,000,245 + +0.6 5,000,245 + -0.1 5,000,245 + -1.4 5,000,245 + -0.2 5,000,245 + -0.3 5,000,245 + +0.1 5,000,245 + -0.2 5,000,245 + +0.4 5,000,245 + +0.2 5,000,245 + -0.1 5,000,246 - -0.0 5,000,246 - +0.1 5,000,246 - +0.8 5,000,246 - -0.8 5,000,246 - +0.3 5,000,246 - +0.2 5,000,246 - -0.3 5,000,312 + -0.4 5,000,313 - +0.3 5,000,348 + +0.4 5,000,348 + +0.1 5,000,348 + +0.3 5,000,384 + -0.4 5,000,506 + -0.7 5,000,512 - +0.0 5,000,512 - +0.3 5,000,512 - +1.3 5,000,545 + -0.1 5,000,545 + -0.9 5,000,545 + +0.1 5,000,545 + +0.4 5,000,546 - +0.1 5,000,546 - -0.1 5,000,630 - IAI46_23500 0.34 +0.1 5,000,780 + +0.3 5,000,780 + +0.1 5,000,780 + -0.3 5,000,781 - +1.0 5,001,009 + IAI46_23505 0.28 -0.6 5,001,034 + IAI46_23505 0.33 -1.7 5,001,035 - IAI46_23505 0.33 +0.5 5,001,085 + IAI46_23505 0.41 +1.3 5,001,085 + IAI46_23505 0.41 -2.4 5,001,183 + IAI46_23505 0.58 +0.1 5,001,183 + IAI46_23505 0.58 -1.2 5,001,184 - IAI46_23505 0.58 -0.7 5,001,335 + IAI46_23505 0.83 -0.4 5,001,387 + -0.6 5,001,391 + -2.0 5,001,391 + +0.8 5,001,391 + -0.3 5,001,392 - -0.8 5,001,398 + -0.3 5,001,399 - -0.8 5,001,399 - -1.2 5,001,399 - -0.5 5,001,427 + -2.0 5,001,438 + -0.2 5,001,445 + -0.3 5,001,455 + -0.8 5,001,455 + -0.8 5,001,455 + +0.6 5,001,456 - +0.3 5,001,456 - +0.5 5,001,456 - +0.4 5,001,503 - +1.0 5,001,558 + +0.8 5,001,697 + IAI46_23510 0.69 +0.2 5,001,709 + IAI46_23510 0.75 +0.5 5,001,710 - IAI46_23510 0.75 +0.2 5,001,776 + -2.0
Or see this region's nucleotide sequence