Strain Fitness in Serratia liquefaciens MT49 around IAI46_21445

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_21435 and IAI46_21440 are separated by 37 nucleotidesIAI46_21440 and IAI46_21445 are separated by 100 nucleotidesIAI46_21445 and IAI46_21450 are separated by 30 nucleotides IAI46_21435: IAI46_21435 - radical SAM family heme chaperone HemW, at 4,543,086 to 4,544,225 _21435 IAI46_21440: IAI46_21440 - DUF29 domain-containing protein, at 4,544,263 to 4,544,697 _21440 IAI46_21445: IAI46_21445 - DUF2884 domain-containing protein, at 4,544,798 to 4,545,514 _21445 IAI46_21450: IAI46_21450 - glutaminase B, at 4,545,545 to 4,546,468 _21450 Position (kb) 4544 4545 4546Strain fitness (log2 ratio) -2 -1 0 1 2at 4543.807 kb on - strand, within IAI46_21435at 4543.835 kb on + strand, within IAI46_21435at 4543.836 kb on - strand, within IAI46_21435at 4543.836 kb on - strand, within IAI46_21435at 4543.845 kb on + strand, within IAI46_21435at 4543.845 kb on + strand, within IAI46_21435at 4543.956 kb on - strand, within IAI46_21435at 4543.956 kb on - strand, within IAI46_21435at 4543.968 kb on + strand, within IAI46_21435at 4543.968 kb on + strand, within IAI46_21435at 4543.968 kb on + strand, within IAI46_21435at 4543.968 kb on + strand, within IAI46_21435at 4543.969 kb on - strand, within IAI46_21435at 4543.969 kb on - strand, within IAI46_21435at 4543.969 kb on - strand, within IAI46_21435at 4543.969 kb on - strand, within IAI46_21435at 4543.971 kb on - strand, within IAI46_21435at 4544.073 kb on + strand, within IAI46_21435at 4544.074 kb on - strand, within IAI46_21435at 4544.133 kb on + strandat 4544.134 kb on - strandat 4544.198 kb on - strandat 4544.310 kb on + strand, within IAI46_21440at 4544.374 kb on + strand, within IAI46_21440at 4544.374 kb on + strand, within IAI46_21440at 4544.374 kb on + strand, within IAI46_21440at 4544.375 kb on - strand, within IAI46_21440at 4544.437 kb on - strand, within IAI46_21440at 4544.438 kb on + strand, within IAI46_21440at 4544.438 kb on + strand, within IAI46_21440at 4544.439 kb on - strand, within IAI46_21440at 4544.451 kb on + strand, within IAI46_21440at 4544.452 kb on - strand, within IAI46_21440at 4544.452 kb on - strand, within IAI46_21440at 4544.524 kb on + strand, within IAI46_21440at 4544.524 kb on + strand, within IAI46_21440at 4544.524 kb on + strand, within IAI46_21440at 4544.525 kb on - strand, within IAI46_21440at 4544.525 kb on - strand, within IAI46_21440at 4544.527 kb on + strand, within IAI46_21440at 4544.527 kb on + strand, within IAI46_21440at 4544.527 kb on + strand, within IAI46_21440at 4544.528 kb on - strand, within IAI46_21440at 4544.528 kb on - strand, within IAI46_21440at 4544.528 kb on - strand, within IAI46_21440at 4544.689 kb on - strandat 4544.732 kb on - strandat 4544.752 kb on + strandat 4544.752 kb on + strandat 4544.752 kb on + strandat 4544.752 kb on + strandat 4544.799 kb on + strandat 4544.799 kb on + strandat 4545.017 kb on + strand, within IAI46_21445at 4545.043 kb on + strand, within IAI46_21445at 4545.044 kb on - strand, within IAI46_21445at 4545.044 kb on - strand, within IAI46_21445at 4545.136 kb on + strand, within IAI46_21445at 4545.137 kb on - strand, within IAI46_21445at 4545.292 kb on - strand, within IAI46_21445at 4545.350 kb on + strand, within IAI46_21445at 4545.351 kb on - strand, within IAI46_21445at 4545.402 kb on - strand, within IAI46_21445at 4545.439 kb on + strand, within IAI46_21445at 4545.439 kb on + strand, within IAI46_21445at 4545.510 kb on - strandat 4545.514 kb on + strandat 4545.514 kb on + strandat 4545.514 kb on + strandat 4545.515 kb on - strandat 4545.515 kb on - strandat 4545.515 kb on - strandat 4545.515 kb on - strandat 4545.515 kb on - strandat 4545.516 kb on + strandat 4545.516 kb on + strandat 4545.517 kb on - strandat 4545.517 kb on - strandat 4545.517 kb on - strandat 4545.517 kb on - strandat 4545.517 kb on - strandat 4545.546 kb on + strandat 4545.610 kb on + strandat 4545.718 kb on - strand, within IAI46_21450at 4545.741 kb on + strand, within IAI46_21450at 4545.742 kb on - strand, within IAI46_21450at 4545.742 kb on - strand, within IAI46_21450at 4545.770 kb on - strand, within IAI46_21450at 4545.794 kb on + strand, within IAI46_21450at 4545.795 kb on - strand, within IAI46_21450at 4545.837 kb on + strand, within IAI46_21450at 4545.838 kb on - strand, within IAI46_21450at 4545.838 kb on - strand, within IAI46_21450at 4545.895 kb on - strand, within IAI46_21450at 4545.895 kb on - strand, within IAI46_21450at 4545.911 kb on - strand, within IAI46_21450at 4545.911 kb on - strand, within IAI46_21450at 4545.911 kb on - strand, within IAI46_21450at 4545.951 kb on + strand, within IAI46_21450at 4545.951 kb on + strand, within IAI46_21450at 4545.952 kb on - strand, within IAI46_21450at 4545.952 kb on - strand, within IAI46_21450at 4545.952 kb on - strand, within IAI46_21450at 4546.012 kb on - strand, within IAI46_21450at 4546.123 kb on + strand, within IAI46_21450at 4546.279 kb on + strand, within IAI46_21450at 4546.280 kb on - strand, within IAI46_21450at 4546.379 kb on + strandat 4546.379 kb on + strandat 4546.379 kb on + strandat 4546.380 kb on - strandat 4546.381 kb on + strandat 4546.381 kb on + strandat 4546.381 kb on + strandat 4546.381 kb on + strandat 4546.381 kb on + strandat 4546.382 kb on - strandat 4546.382 kb on - strandat 4546.382 kb on - strandat 4546.383 kb on + strandat 4546.383 kb on + strandat 4546.383 kb on + strandat 4546.384 kb on - strandat 4546.384 kb on - strandat 4546.384 kb on - strandat 4546.384 kb on - strandat 4546.384 kb on - strandat 4546.463 kb on + strandat 4546.463 kb on + strandat 4546.492 kb on - strandat 4546.492 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
remove
4,543,807 - IAI46_21435 0.63 +0.5
4,543,835 + IAI46_21435 0.66 -0.5
4,543,836 - IAI46_21435 0.66 -0.3
4,543,836 - IAI46_21435 0.66 -0.0
4,543,845 + IAI46_21435 0.67 -0.2
4,543,845 + IAI46_21435 0.67 +0.5
4,543,956 - IAI46_21435 0.76 -0.2
4,543,956 - IAI46_21435 0.76 +0.1
4,543,968 + IAI46_21435 0.77 +0.6
4,543,968 + IAI46_21435 0.77 -0.1
4,543,968 + IAI46_21435 0.77 +1.1
4,543,968 + IAI46_21435 0.77 -1.2
4,543,969 - IAI46_21435 0.77 -0.9
4,543,969 - IAI46_21435 0.77 +0.3
4,543,969 - IAI46_21435 0.77 -0.9
4,543,969 - IAI46_21435 0.77 +1.1
4,543,971 - IAI46_21435 0.78 +0.3
4,544,073 + IAI46_21435 0.87 +0.4
4,544,074 - IAI46_21435 0.87 +0.4
4,544,133 + -0.0
4,544,134 - +1.6
4,544,198 - -0.3
4,544,310 + IAI46_21440 0.11 +0.3
4,544,374 + IAI46_21440 0.26 -0.9
4,544,374 + IAI46_21440 0.26 -0.4
4,544,374 + IAI46_21440 0.26 -0.2
4,544,375 - IAI46_21440 0.26 +1.9
4,544,437 - IAI46_21440 0.40 +1.0
4,544,438 + IAI46_21440 0.40 +0.0
4,544,438 + IAI46_21440 0.40 +0.3
4,544,439 - IAI46_21440 0.40 -0.2
4,544,451 + IAI46_21440 0.43 +0.8
4,544,452 - IAI46_21440 0.43 -0.0
4,544,452 - IAI46_21440 0.43 +0.4
4,544,524 + IAI46_21440 0.60 -0.0
4,544,524 + IAI46_21440 0.60 +0.1
4,544,524 + IAI46_21440 0.60 -0.1
4,544,525 - IAI46_21440 0.60 -0.6
4,544,525 - IAI46_21440 0.60 -0.3
4,544,527 + IAI46_21440 0.61 +0.8
4,544,527 + IAI46_21440 0.61 +0.6
4,544,527 + IAI46_21440 0.61 +0.3
4,544,528 - IAI46_21440 0.61 +0.7
4,544,528 - IAI46_21440 0.61 +0.3
4,544,528 - IAI46_21440 0.61 +1.2
4,544,689 - -0.4
4,544,732 - -0.0
4,544,752 + +1.0
4,544,752 + +0.4
4,544,752 + +0.3
4,544,752 + +0.4
4,544,799 + -0.5
4,544,799 + +1.0
4,545,017 + IAI46_21445 0.31 +0.5
4,545,043 + IAI46_21445 0.34 -1.4
4,545,044 - IAI46_21445 0.34 -0.1
4,545,044 - IAI46_21445 0.34 +1.3
4,545,136 + IAI46_21445 0.47 +0.3
4,545,137 - IAI46_21445 0.47 +0.8
4,545,292 - IAI46_21445 0.69 +1.1
4,545,350 + IAI46_21445 0.77 +0.6
4,545,351 - IAI46_21445 0.77 -0.3
4,545,402 - IAI46_21445 0.84 -0.1
4,545,439 + IAI46_21445 0.89 -0.2
4,545,439 + IAI46_21445 0.89 -0.0
4,545,510 - -0.1
4,545,514 + -0.1
4,545,514 + -0.1
4,545,514 + +0.0
4,545,515 - +0.1
4,545,515 - +0.3
4,545,515 - -0.6
4,545,515 - +0.2
4,545,515 - +0.4
4,545,516 + +0.4
4,545,516 + +0.3
4,545,517 - -0.4
4,545,517 - -0.5
4,545,517 - -0.3
4,545,517 - +0.7
4,545,517 - +0.3
4,545,546 + -0.1
4,545,610 + -0.1
4,545,718 - IAI46_21450 0.19 -0.3
4,545,741 + IAI46_21450 0.21 +0.2
4,545,742 - IAI46_21450 0.21 -0.7
4,545,742 - IAI46_21450 0.21 +0.3
4,545,770 - IAI46_21450 0.24 -0.0
4,545,794 + IAI46_21450 0.27 +0.3
4,545,795 - IAI46_21450 0.27 -0.1
4,545,837 + IAI46_21450 0.32 +0.1
4,545,838 - IAI46_21450 0.32 -1.1
4,545,838 - IAI46_21450 0.32 +0.1
4,545,895 - IAI46_21450 0.38 -0.4
4,545,895 - IAI46_21450 0.38 +0.5
4,545,911 - IAI46_21450 0.40 -1.2
4,545,911 - IAI46_21450 0.40 +1.3
4,545,911 - IAI46_21450 0.40 -0.4
4,545,951 + IAI46_21450 0.44 +0.1
4,545,951 + IAI46_21450 0.44 -0.2
4,545,952 - IAI46_21450 0.44 -0.1
4,545,952 - IAI46_21450 0.44 -0.5
4,545,952 - IAI46_21450 0.44 +1.7
4,546,012 - IAI46_21450 0.51 -0.2
4,546,123 + IAI46_21450 0.63 +0.5
4,546,279 + IAI46_21450 0.79 -0.0
4,546,280 - IAI46_21450 0.80 +0.5
4,546,379 + +0.3
4,546,379 + +0.9
4,546,379 + -0.5
4,546,380 - +0.7
4,546,381 + -0.1
4,546,381 + +0.8
4,546,381 + -1.7
4,546,381 + +0.3
4,546,381 + +0.5
4,546,382 - +1.1
4,546,382 - -0.3
4,546,382 - +0.8
4,546,383 + -0.4
4,546,383 + +1.3
4,546,383 + +0.5
4,546,384 - -0.6
4,546,384 - +0.6
4,546,384 - +0.2
4,546,384 - +1.2
4,546,384 - +0.4
4,546,463 + -2.6
4,546,463 + +1.2
4,546,492 - -0.5
4,546,492 - -0.5

Or see this region's nucleotide sequence