Strain Fitness in Serratia liquefaciens MT49 around IAI46_20965

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20960 and IAI46_20965 overlap by 4 nucleotidesIAI46_20965 and IAI46_20970 are separated by 9 nucleotidesIAI46_20970 and IAI46_20975 are separated by 1 nucleotides IAI46_20960: IAI46_20960 - MFS transporter, at 4,436,225 to 4,437,520 _20960 IAI46_20965: IAI46_20965 - carbohydrate kinase, at 4,437,517 to 4,438,998 _20965 IAI46_20970: IAI46_20970 - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 4,439,008 to 4,439,664 _20970 IAI46_20975: IAI46_20975 - L-ribulose-5-phosphate 3-epimerase, at 4,439,666 to 4,440,526 _20975 Position (kb) 4437 4438 4439Strain fitness (log2 ratio) -2 -1 0 1 2at 4436.556 kb on - strand, within IAI46_20960at 4436.565 kb on + strand, within IAI46_20960at 4436.565 kb on + strand, within IAI46_20960at 4436.676 kb on + strand, within IAI46_20960at 4436.677 kb on - strand, within IAI46_20960at 4436.677 kb on - strand, within IAI46_20960at 4436.677 kb on - strand, within IAI46_20960at 4436.681 kb on - strand, within IAI46_20960at 4436.702 kb on - strand, within IAI46_20960at 4436.804 kb on + strand, within IAI46_20960at 4436.804 kb on + strand, within IAI46_20960at 4436.865 kb on - strand, within IAI46_20960at 4437.002 kb on + strand, within IAI46_20960at 4437.002 kb on + strand, within IAI46_20960at 4437.002 kb on + strand, within IAI46_20960at 4437.003 kb on - strand, within IAI46_20960at 4437.003 kb on - strand, within IAI46_20960at 4437.003 kb on - strand, within IAI46_20960at 4437.089 kb on + strand, within IAI46_20960at 4437.089 kb on + strand, within IAI46_20960at 4437.089 kb on + strand, within IAI46_20960at 4437.090 kb on - strand, within IAI46_20960at 4437.090 kb on - strand, within IAI46_20960at 4437.193 kb on + strand, within IAI46_20960at 4437.194 kb on - strand, within IAI46_20960at 4437.236 kb on + strand, within IAI46_20960at 4437.237 kb on - strand, within IAI46_20960at 4437.387 kb on - strand, within IAI46_20960at 4437.387 kb on - strand, within IAI46_20960at 4437.387 kb on - strand, within IAI46_20960at 4437.387 kb on - strand, within IAI46_20960at 4437.519 kb on - strandat 4437.527 kb on - strandat 4437.574 kb on + strandat 4437.588 kb on + strandat 4437.589 kb on - strandat 4437.601 kb on - strandat 4437.658 kb on - strandat 4438.000 kb on + strand, within IAI46_20965at 4438.000 kb on + strand, within IAI46_20965at 4438.001 kb on - strand, within IAI46_20965at 4438.146 kb on + strand, within IAI46_20965at 4438.309 kb on - strand, within IAI46_20965at 4438.400 kb on - strand, within IAI46_20965at 4438.400 kb on - strand, within IAI46_20965at 4438.400 kb on - strand, within IAI46_20965at 4438.475 kb on - strand, within IAI46_20965at 4438.475 kb on - strand, within IAI46_20965at 4438.547 kb on - strand, within IAI46_20965at 4438.656 kb on + strand, within IAI46_20965at 4438.931 kb on - strandat 4438.997 kb on - strandat 4439.017 kb on - strandat 4439.054 kb on + strandat 4439.055 kb on - strandat 4439.055 kb on - strandat 4439.123 kb on + strand, within IAI46_20970at 4439.124 kb on - strand, within IAI46_20970at 4439.181 kb on + strand, within IAI46_20970at 4439.181 kb on + strand, within IAI46_20970at 4439.181 kb on + strand, within IAI46_20970at 4439.181 kb on + strand, within IAI46_20970at 4439.182 kb on - strand, within IAI46_20970at 4439.182 kb on - strand, within IAI46_20970at 4439.182 kb on - strand, within IAI46_20970at 4439.182 kb on - strand, within IAI46_20970at 4439.182 kb on - strand, within IAI46_20970at 4439.412 kb on - strand, within IAI46_20970at 4439.413 kb on + strand, within IAI46_20970at 4439.413 kb on + strand, within IAI46_20970at 4439.413 kb on + strand, within IAI46_20970at 4439.413 kb on + strand, within IAI46_20970at 4439.414 kb on - strand, within IAI46_20970at 4439.414 kb on - strand, within IAI46_20970at 4439.414 kb on - strand, within IAI46_20970at 4439.414 kb on - strand, within IAI46_20970at 4439.414 kb on - strand, within IAI46_20970at 4439.414 kb on - strand, within IAI46_20970at 4439.414 kb on - strand, within IAI46_20970

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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4,436,556 - IAI46_20960 0.26 -0.6
4,436,565 + IAI46_20960 0.26 -0.7
4,436,565 + IAI46_20960 0.26 -0.5
4,436,676 + IAI46_20960 0.35 +0.1
4,436,677 - IAI46_20960 0.35 -0.1
4,436,677 - IAI46_20960 0.35 +0.6
4,436,677 - IAI46_20960 0.35 +0.0
4,436,681 - IAI46_20960 0.35 +1.3
4,436,702 - IAI46_20960 0.37 +0.2
4,436,804 + IAI46_20960 0.45 +0.1
4,436,804 + IAI46_20960 0.45 +0.6
4,436,865 - IAI46_20960 0.49 +0.2
4,437,002 + IAI46_20960 0.60 -0.2
4,437,002 + IAI46_20960 0.60 +0.3
4,437,002 + IAI46_20960 0.60 -0.8
4,437,003 - IAI46_20960 0.60 +1.6
4,437,003 - IAI46_20960 0.60 -0.1
4,437,003 - IAI46_20960 0.60 -0.4
4,437,089 + IAI46_20960 0.67 -0.6
4,437,089 + IAI46_20960 0.67 -0.8
4,437,089 + IAI46_20960 0.67 +0.7
4,437,090 - IAI46_20960 0.67 +1.0
4,437,090 - IAI46_20960 0.67 +1.0
4,437,193 + IAI46_20960 0.75 +0.1
4,437,194 - IAI46_20960 0.75 +0.3
4,437,236 + IAI46_20960 0.78 +0.6
4,437,237 - IAI46_20960 0.78 +0.3
4,437,387 - IAI46_20960 0.90 -0.7
4,437,387 - IAI46_20960 0.90 +0.5
4,437,387 - IAI46_20960 0.90 +1.5
4,437,387 - IAI46_20960 0.90 -0.5
4,437,519 - +0.6
4,437,527 - -0.2
4,437,574 + +0.1
4,437,588 + +0.4
4,437,589 - +0.4
4,437,601 - +1.7
4,437,658 - +0.2
4,438,000 + IAI46_20965 0.33 +1.3
4,438,000 + IAI46_20965 0.33 -2.2
4,438,001 - IAI46_20965 0.33 +0.2
4,438,146 + IAI46_20965 0.42 -0.1
4,438,309 - IAI46_20965 0.53 -0.0
4,438,400 - IAI46_20965 0.60 +0.6
4,438,400 - IAI46_20965 0.60 +0.1
4,438,400 - IAI46_20965 0.60 -0.3
4,438,475 - IAI46_20965 0.65 +1.7
4,438,475 - IAI46_20965 0.65 -0.2
4,438,547 - IAI46_20965 0.70 +1.3
4,438,656 + IAI46_20965 0.77 +0.5
4,438,931 - +0.1
4,438,997 - +0.2
4,439,017 - +0.7
4,439,054 + -2.5
4,439,055 - -0.9
4,439,055 - -0.4
4,439,123 + IAI46_20970 0.18 +0.3
4,439,124 - IAI46_20970 0.18 +2.1
4,439,181 + IAI46_20970 0.26 -0.7
4,439,181 + IAI46_20970 0.26 +1.0
4,439,181 + IAI46_20970 0.26 +0.3
4,439,181 + IAI46_20970 0.26 -0.2
4,439,182 - IAI46_20970 0.26 +0.3
4,439,182 - IAI46_20970 0.26 +1.0
4,439,182 - IAI46_20970 0.26 -0.3
4,439,182 - IAI46_20970 0.26 +0.0
4,439,182 - IAI46_20970 0.26 +0.5
4,439,412 - IAI46_20970 0.61 +0.2
4,439,413 + IAI46_20970 0.62 -0.4
4,439,413 + IAI46_20970 0.62 +0.3
4,439,413 + IAI46_20970 0.62 -0.3
4,439,413 + IAI46_20970 0.62 +0.2
4,439,414 - IAI46_20970 0.62 +0.2
4,439,414 - IAI46_20970 0.62 -0.4
4,439,414 - IAI46_20970 0.62 -0.3
4,439,414 - IAI46_20970 0.62 +1.1
4,439,414 - IAI46_20970 0.62 -0.2
4,439,414 - IAI46_20970 0.62 -0.3
4,439,414 - IAI46_20970 0.62 +2.6

Or see this region's nucleotide sequence