Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_19600 and IAI46_19605 are separated by 58 nucleotides IAI46_19605 and IAI46_19610 overlap by 8 nucleotides
IAI46_19600: IAI46_19600 - ATP-dependent RNA helicase SrmB, at 4,142,277 to 4,143,602
_19600
IAI46_19605: IAI46_19605 - ankyrin repeat domain-containing protein, at 4,143,661 to 4,144,416
_19605
IAI46_19610: IAI46_19610 - DUF2974 domain-containing protein, at 4,144,409 to 4,145,371
_19610
Position (kb)
4143
4144
4145 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4142.694 kb on + strand, within IAI46_19600 at 4142.696 kb on + strand, within IAI46_19600 at 4142.697 kb on - strand, within IAI46_19600 at 4142.820 kb on - strand, within IAI46_19600 at 4142.934 kb on - strand, within IAI46_19600 at 4142.952 kb on + strand, within IAI46_19600 at 4142.952 kb on + strand, within IAI46_19600 at 4142.952 kb on + strand, within IAI46_19600 at 4142.956 kb on - strand, within IAI46_19600 at 4142.971 kb on + strand, within IAI46_19600 at 4142.971 kb on + strand, within IAI46_19600 at 4142.972 kb on - strand, within IAI46_19600 at 4142.978 kb on + strand, within IAI46_19600 at 4143.266 kb on + strand, within IAI46_19600 at 4143.267 kb on - strand, within IAI46_19600 at 4143.267 kb on - strand, within IAI46_19600 at 4143.270 kb on + strand, within IAI46_19600 at 4143.270 kb on + strand, within IAI46_19600 at 4143.270 kb on + strand, within IAI46_19600 at 4143.271 kb on - strand, within IAI46_19600 at 4143.600 kb on + strand at 4143.601 kb on - strand at 4143.652 kb on + strand at 4143.769 kb on + strand, within IAI46_19605 at 4143.773 kb on + strand, within IAI46_19605 at 4144.142 kb on - strand, within IAI46_19605 at 4144.249 kb on - strand, within IAI46_19605 at 4144.333 kb on - strand, within IAI46_19605 at 4144.466 kb on - strand at 4144.620 kb on + strand, within IAI46_19610 at 4144.621 kb on - strand, within IAI46_19610 at 4144.915 kb on + strand, within IAI46_19610 at 4144.916 kb on - strand, within IAI46_19610 at 4144.944 kb on + strand, within IAI46_19610 at 4144.944 kb on + strand, within IAI46_19610 at 4144.944 kb on + strand, within IAI46_19610 at 4144.944 kb on + strand, within IAI46_19610 at 4144.944 kb on + strand, within IAI46_19610 at 4144.944 kb on + strand, within IAI46_19610 at 4144.944 kb on + strand, within IAI46_19610 at 4144.945 kb on - strand, within IAI46_19610 at 4144.945 kb on - strand, within IAI46_19610 at 4144.962 kb on + strand, within IAI46_19610 at 4144.962 kb on + strand, within IAI46_19610 at 4144.963 kb on - strand, within IAI46_19610 at 4144.963 kb on - strand, within IAI46_19610 at 4145.110 kb on + strand, within IAI46_19610 at 4145.110 kb on + strand, within IAI46_19610 at 4145.110 kb on + strand, within IAI46_19610 at 4145.110 kb on + strand, within IAI46_19610 at 4145.111 kb on - strand, within IAI46_19610 at 4145.111 kb on - strand, within IAI46_19610 at 4145.111 kb on - strand, within IAI46_19610 at 4145.111 kb on - strand, within IAI46_19610 at 4145.111 kb on - strand, within IAI46_19610 at 4145.113 kb on - strand, within IAI46_19610 at 4145.113 kb on - strand, within IAI46_19610 at 4145.113 kb on - strand, within IAI46_19610 at 4145.224 kb on + strand, within IAI46_19610 at 4145.225 kb on - strand, within IAI46_19610 at 4145.272 kb on + strand, within IAI46_19610 at 4145.305 kb on + strand at 4145.365 kb on + strand at 4145.365 kb on + strand at 4145.365 kb on + strand at 4145.366 kb on - strand at 4145.366 kb on - strand at 4145.389 kb on - strand at 4145.389 kb on - strand at 4145.394 kb on + strand at 4145.394 kb on + strand at 4145.395 kb on - strand at 4145.395 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic remove 4,142,694 + IAI46_19600 0.31 +0.0 4,142,696 + IAI46_19600 0.32 +0.4 4,142,697 - IAI46_19600 0.32 -0.6 4,142,820 - IAI46_19600 0.41 -0.3 4,142,934 - IAI46_19600 0.50 -0.8 4,142,952 + IAI46_19600 0.51 -0.6 4,142,952 + IAI46_19600 0.51 +0.4 4,142,952 + IAI46_19600 0.51 -0.6 4,142,956 - IAI46_19600 0.51 +1.0 4,142,971 + IAI46_19600 0.52 -0.3 4,142,971 + IAI46_19600 0.52 -1.6 4,142,972 - IAI46_19600 0.52 -0.3 4,142,978 + IAI46_19600 0.53 +0.6 4,143,266 + IAI46_19600 0.75 +0.0 4,143,267 - IAI46_19600 0.75 +0.0 4,143,267 - IAI46_19600 0.75 -1.6 4,143,270 + IAI46_19600 0.75 -0.1 4,143,270 + IAI46_19600 0.75 -0.8 4,143,270 + IAI46_19600 0.75 -1.3 4,143,271 - IAI46_19600 0.75 +2.6 4,143,600 + -0.5 4,143,601 - +0.3 4,143,652 + -0.4 4,143,769 + IAI46_19605 0.14 +0.4 4,143,773 + IAI46_19605 0.15 +0.0 4,144,142 - IAI46_19605 0.64 +1.2 4,144,249 - IAI46_19605 0.78 -0.4 4,144,333 - IAI46_19605 0.89 +0.5 4,144,466 - -0.6 4,144,620 + IAI46_19610 0.22 -1.0 4,144,621 - IAI46_19610 0.22 +0.4 4,144,915 + IAI46_19610 0.53 -0.8 4,144,916 - IAI46_19610 0.53 +0.5 4,144,944 + IAI46_19610 0.56 -0.4 4,144,944 + IAI46_19610 0.56 -1.2 4,144,944 + IAI46_19610 0.56 +0.3 4,144,944 + IAI46_19610 0.56 +1.1 4,144,944 + IAI46_19610 0.56 +0.2 4,144,944 + IAI46_19610 0.56 -1.2 4,144,944 + IAI46_19610 0.56 +0.4 4,144,945 - IAI46_19610 0.56 +0.8 4,144,945 - IAI46_19610 0.56 -0.0 4,144,962 + IAI46_19610 0.57 -0.5 4,144,962 + IAI46_19610 0.57 -0.3 4,144,963 - IAI46_19610 0.58 +0.5 4,144,963 - IAI46_19610 0.58 +0.0 4,145,110 + IAI46_19610 0.73 -0.3 4,145,110 + IAI46_19610 0.73 -0.6 4,145,110 + IAI46_19610 0.73 +0.6 4,145,110 + IAI46_19610 0.73 -0.0 4,145,111 - IAI46_19610 0.73 +0.3 4,145,111 - IAI46_19610 0.73 -0.3 4,145,111 - IAI46_19610 0.73 -1.0 4,145,111 - IAI46_19610 0.73 +0.2 4,145,111 - IAI46_19610 0.73 +0.1 4,145,113 - IAI46_19610 0.73 +0.1 4,145,113 - IAI46_19610 0.73 +0.5 4,145,113 - IAI46_19610 0.73 +0.0 4,145,224 + IAI46_19610 0.85 +1.0 4,145,225 - IAI46_19610 0.85 +0.1 4,145,272 + IAI46_19610 0.90 +0.2 4,145,305 + +0.4 4,145,365 + +0.8 4,145,365 + -0.2 4,145,365 + -1.8 4,145,366 - +0.3 4,145,366 - +0.5 4,145,389 - +0.8 4,145,389 - +1.3 4,145,394 + +1.5 4,145,394 + +0.5 4,145,395 - -0.9 4,145,395 - +0.0
Or see this region's nucleotide sequence