Strain Fitness in Serratia liquefaciens MT49 around IAI46_19255

Experiment: Manganese (II) chloride tetrahydrate 50 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19250 and IAI46_19255 are separated by 99 nucleotidesIAI46_19255 and IAI46_19260 are separated by 254 nucleotides IAI46_19250: IAI46_19250 - AEC family transporter, at 4,062,672 to 4,063,628 _19250 IAI46_19255: IAI46_19255 - ribosome biogenesis GTPase Der, at 4,063,728 to 4,065,215 _19255 IAI46_19260: IAI46_19260 - outer membrane protein assembly factor BamB, at 4,065,470 to 4,066,651 _19260 Position (kb) 4063 4064 4065 4066Strain fitness (log2 ratio) -1 0 1 2at 4062.799 kb on + strand, within IAI46_19250at 4062.800 kb on - strand, within IAI46_19250at 4062.839 kb on + strand, within IAI46_19250at 4062.839 kb on + strand, within IAI46_19250at 4062.839 kb on + strand, within IAI46_19250at 4062.840 kb on - strand, within IAI46_19250at 4062.840 kb on - strand, within IAI46_19250at 4062.840 kb on - strand, within IAI46_19250at 4063.020 kb on - strand, within IAI46_19250at 4063.020 kb on - strand, within IAI46_19250at 4063.020 kb on - strand, within IAI46_19250at 4063.021 kb on + strand, within IAI46_19250at 4063.021 kb on + strand, within IAI46_19250at 4063.021 kb on + strand, within IAI46_19250at 4063.021 kb on + strand, within IAI46_19250at 4063.022 kb on - strand, within IAI46_19250at 4063.022 kb on - strand, within IAI46_19250at 4063.022 kb on - strand, within IAI46_19250at 4063.022 kb on - strand, within IAI46_19250at 4063.022 kb on - strand, within IAI46_19250at 4063.118 kb on + strand, within IAI46_19250at 4063.151 kb on + strand, within IAI46_19250at 4063.197 kb on + strand, within IAI46_19250at 4063.198 kb on - strand, within IAI46_19250at 4063.198 kb on - strand, within IAI46_19250at 4063.228 kb on + strand, within IAI46_19250at 4063.229 kb on - strand, within IAI46_19250at 4063.229 kb on - strand, within IAI46_19250at 4063.230 kb on + strand, within IAI46_19250at 4063.231 kb on - strand, within IAI46_19250at 4063.231 kb on - strand, within IAI46_19250at 4063.276 kb on + strand, within IAI46_19250at 4063.276 kb on + strand, within IAI46_19250at 4063.276 kb on + strand, within IAI46_19250at 4063.277 kb on - strand, within IAI46_19250at 4063.552 kb on - strandat 4063.575 kb on + strandat 4063.575 kb on + strandat 4063.667 kb on + strandat 4063.730 kb on - strandat 4065.283 kb on - strandat 4065.381 kb on - strandat 4065.389 kb on - strandat 4065.389 kb on - strandat 4065.389 kb on - strandat 4065.472 kb on - strandat 4065.560 kb on - strandat 4065.602 kb on - strand, within IAI46_19260at 4065.652 kb on - strand, within IAI46_19260at 4065.652 kb on - strand, within IAI46_19260at 4065.760 kb on - strand, within IAI46_19260at 4065.760 kb on - strand, within IAI46_19260at 4065.760 kb on - strand, within IAI46_19260at 4065.867 kb on - strand, within IAI46_19260at 4065.874 kb on - strand, within IAI46_19260at 4065.956 kb on - strand, within IAI46_19260at 4065.993 kb on - strand, within IAI46_19260at 4066.153 kb on + strand, within IAI46_19260at 4066.154 kb on - strand, within IAI46_19260

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, anaerobic
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4,062,799 + IAI46_19250 0.13 -0.0
4,062,800 - IAI46_19250 0.13 +0.5
4,062,839 + IAI46_19250 0.17 -1.2
4,062,839 + IAI46_19250 0.17 -0.1
4,062,839 + IAI46_19250 0.17 -0.6
4,062,840 - IAI46_19250 0.18 +0.8
4,062,840 - IAI46_19250 0.18 +1.8
4,062,840 - IAI46_19250 0.18 +0.1
4,063,020 - IAI46_19250 0.36 +1.6
4,063,020 - IAI46_19250 0.36 +0.2
4,063,020 - IAI46_19250 0.36 -0.3
4,063,021 + IAI46_19250 0.36 -0.7
4,063,021 + IAI46_19250 0.36 +0.2
4,063,021 + IAI46_19250 0.36 +1.8
4,063,021 + IAI46_19250 0.36 +0.4
4,063,022 - IAI46_19250 0.37 +0.8
4,063,022 - IAI46_19250 0.37 +0.0
4,063,022 - IAI46_19250 0.37 -0.2
4,063,022 - IAI46_19250 0.37 -0.1
4,063,022 - IAI46_19250 0.37 +0.2
4,063,118 + IAI46_19250 0.47 -0.2
4,063,151 + IAI46_19250 0.50 +0.0
4,063,197 + IAI46_19250 0.55 -1.0
4,063,198 - IAI46_19250 0.55 +0.6
4,063,198 - IAI46_19250 0.55 -1.2
4,063,228 + IAI46_19250 0.58 +0.1
4,063,229 - IAI46_19250 0.58 +0.9
4,063,229 - IAI46_19250 0.58 +0.7
4,063,230 + IAI46_19250 0.58 +0.0
4,063,231 - IAI46_19250 0.58 +0.1
4,063,231 - IAI46_19250 0.58 +0.5
4,063,276 + IAI46_19250 0.63 -0.4
4,063,276 + IAI46_19250 0.63 -0.3
4,063,276 + IAI46_19250 0.63 -0.7
4,063,277 - IAI46_19250 0.63 +0.5
4,063,552 - +0.3
4,063,575 + +0.1
4,063,575 + +1.4
4,063,667 + +0.8
4,063,730 - -0.4
4,065,283 - -1.1
4,065,381 - -0.1
4,065,389 - -0.7
4,065,389 - -1.1
4,065,389 - -1.3
4,065,472 - +0.2
4,065,560 - -0.8
4,065,602 - IAI46_19260 0.11 -0.3
4,065,652 - IAI46_19260 0.15 -0.8
4,065,652 - IAI46_19260 0.15 -1.6
4,065,760 - IAI46_19260 0.25 -1.2
4,065,760 - IAI46_19260 0.25 +1.7
4,065,760 - IAI46_19260 0.25 +1.1
4,065,867 - IAI46_19260 0.34 -1.5
4,065,874 - IAI46_19260 0.34 -0.6
4,065,956 - IAI46_19260 0.41 -0.9
4,065,993 - IAI46_19260 0.44 -0.3
4,066,153 + IAI46_19260 0.58 +0.7
4,066,154 - IAI46_19260 0.58 -0.3

Or see this region's nucleotide sequence